Data Collections

Vigna data collections

Vigna angularis

Genomes

Gyeongwon.gnm3.JyYC
genome assembly
Shumari.gnm1.V0CS
Vigna angularis accession Shumari genome

Annotations

Gyeongwon.gnm3.ann1.3Nz5
Directory of gene annotations, called on an assembly of pseudomolecules and remaining scaffold sequences
Shumari.gnm1.ann1.8BRS
Vigna angularis accession Shumari genome annotation files

Vigna radiata

Genomes

VC1973A.gnm6.3nL8
Directory of scaffold assemblies and pseudomolecule assemblies.

Annotations

VC1973A.gnm6.ann1.M1Qs
Gene annotations

GWAS

IA_panel.gwas.Sandhu_Singh_2020
Strategies for the utilization of the USDA mung bean germplasm collection for breeding outcomes

Markers

VC1973A.gnm6.mrk.Sandhu_Singh_2020
Genotyping with the 51,128 single nucleotide polymorphism (SNP) Illumina iSelect BeadArray resulted in 36,346 SNPs that were polymorphic between the eight parents (68.26%).
VC1973A.gnm6.mrk.microsatellites
SSR markers and genomic locations on the genome sequence of Vigna radiata, accession VC1973A

Diversity

VC1973A.gnm6.div.Sandhu_Singh_2020
Genetic variants for Vigna radiata, assessed across 500 accessions to create the Iowamung bean panel; genotyped relative to accession VC1973A.gnm6

Vigna unguiculata

Genomes

CB5-2.gnm1.WDTB
Vigna unguiculata genome assembly for CB5-2
IT97K-499-35.gnm1.QnBW
Vigna unguiculata accession IT97K-499-35 genome assembly 1.0
Sanzi.gnm1.YNCM
Vigna unguiculata genome assembly for Sanzi
Suvita2.gnm1.5QLL
Vigna unguiculata genome assembly for Suvita2
TZ30.gnm1.TX9W
Vigna unguiculata genome assembly for TZ30
UCR779.gnm1.M7KZ
Vigna unguiculata genome assembly for UCR779
Xiabao_II.gnm1.WDBP
Vigna unguiculata genome assembly for Xiabao_II
ZN016.gnm1.997F
Vigna unguiculata genome assembly for ZN016

Annotations

CB5-2.gnm1.ann1.0GKC
Genome annotation for Vigna unguiculata CB5-2
IT97K-499-35.gnm1.ann1.zb5D
Vigna unguiculata accession IT97K-499-35; JGI annotation version 1 on assembly 1
IT97K-499-35.gnm1.ann2.FD7K
Genome annotation version 2 for Vigna unguiculata IT97K-499-35
Sanzi.gnm1.ann1.HFH8
Genome annotation for Vigna unguiculata Sanzi
Suvita2.gnm1.ann1.1PF6
Genome annotation for Vigna unguiculata Suvita2
TZ30.gnm1.ann2.59NL
Genome annotation for Vigna unguiculata TZ30
UCR779.gnm1.ann1.VF6G
Genome annotation for Vigna unguiculata UCR779
Xiabao_II.gnm1.ann1.4JFL
Genome annotation for Vigna unguiculata Xiabao_II
ZN016.gnm1.ann2.C7YV
Genome annotation for Vigna unguiculata ZN016

Expression

IT97K-499-35.gnm1.ann1.expr.Yao_Jiang_2016
Black-eyed pea gene expression atlas (IT97K-499-35)

GWAS

mixed.gwas.Lo_Muñoz-Amatriaín_2019
GWAS of seed size in cowpea, conducted on 368 diverse accessions from 51 countries, genotyped using the Cowpea iSelect array.

QTL Studies

CB27_x_IT97K-556-6.qtl.Huynh_Ehlers_2015
Field-based assays for genetic mapping involved 92 F8 RILs derived from a cross of cowpea aphid-susceptible CB27 and aphid-resistant breeding line IT97K556-6.
IT99K-573-1-1_x_TVNu-1158.qtl.Lo_Muñoz-Amatriaín_2018
215 F8 RILs developed from the cultivated (IT99K-573-1-1) and wild-type (TVNu-1158) accessions were used in mapping to study domestication-related traits.
MAGIC-2017.qtl.Huynh_Ehlers_2018
A MAGIC population for cowpea developed from eight founder parents.
Sanzi_x_Vita7.qtl.Pottorff_Ehlers_2012
A segregating population of 122 RILs, advanced from Sanzi x Vita 7, reveals a QTL, a candidate gene, and a SNP marker for hastate leaf shape.
ZN016_x_Zhijiang282.qtl.Xu_Wu_2017
A novel genotyping assay for over 50,000 SNPs was employed to delineate genomic regions governing cowpea pod length.
mixed.qtl.Burridge_Schneider_2017
A 189-entry diversity panel was used to study root architecture phenes.
mixed.qtl.Herniter_Muñoz-Amatriaín_2018
Four populations were used to study black seed coat and pod tip color: two biparental RIL populations, the UC-Riverside eight-parent MAGIC population, and a diversity minicore population.
mixed.qtl.Huynh_Matthews_2016
87 RILs from CB27×24-125-B-1; 170 F2:3 families from IT84S-2049×UCR779; 132 F2:3 families from IT93K-503-1×UCR779 are used to study root-knot nematode (RKN) resistance.

Genetic Maps

MAGIC-2017.map.Huynh_Ehlers_2018
A MAGIC population for cowpea developed from eight founder parents.
iSelect-consensus-2016.map.Muñoz-Amatriaín_Mirebrahim_2017
Illumina Cowpea iSelect Consortium Array, built from 37 cowpea accessions

Markers

IT97K-499-35.gnm1.mrk.Cowpea1MSelectedSNPs
SNP mining from 183,118 ESTs sequenced from 17 cDNA libraries yielded ≈10,000 high-confidence SNPs from which an Illumina 1,536-SNP GoldenGate genotyping array was developed.

Diversity

IT97K-499-35.gnm1.div.Huynh_Ehlers_2018
VCF file containing genotype information for 305 F8 RILs, 98.74% homozygous on average while diverse in agronomic traits, mapped to the cowpea IT97K-499-35.gnm1 genome.