Data Collections

Cicer data collections

Cicer arietinum

Genomes

ICC4958.gnm2.bg5m
Genome assembly of Cicer arietinum ICC4958 (desi variety).
CDCFrontier.gnm3.QT0P
Cicer arietinum genotype CDCFrontier genome assembly v3
CDCFrontier.gnm2.S2FF
Cicer arietinum genotype CDCFrontier genome assembly v2.0
CDCFrontier.gnm1.GkHc
Genome assembly of Cicer arietinum CDCFrontier (kabuli variety).

Annotations

CDCFrontier.gnm3.ann1.NPD7
Genome annotation v1 of Cicer arietium genotype CDC Frontier assembly v3
CDCFrontier.gnm2.ann1.9M1L
genome annotation of Cicer arietium (kabuli variety)
CDCFrontier.gnm1.ann1.nRhs
genome annotation of Cicer arietium (kabuli variety)
ICC4958.gnm2.ann1.LCVX
genome annotation of Cicer arietium (desi variety)

Expression

CDCFrontier.gnm3.ann1.expr.Hybrid.Cook_2018
Study of development in a hybrid chickpea genotype, with reads mapped to the CDCFrontier.gnm3.ann1 genome annotation.
CDCFrontier.gnm3.ann1.expr.mixed.Moenga_2018
Study of drought stress effects on gene expression from contrasting drought tolerance chickpea genotypes ICC14778 and ICC8058, with reads mapped to the CDCFrontier.gnm3.ann1 genome annotation.
CDCFrontier.gnm3.ann1.expr.mixed.Sutton_2018a
Study of gene expression in contrasting salt tolerance chickpea genotypes Genesis836 and Rupali, mapped to the CDCFrontier.gnm3.ann1 genome annotation.
ICC4958.gnm2.ann1.expr.ICC4958.Singh_Garg_2013
Chickpea Transcriptome Atlas - I
CDCFrontier.gnm3.ann1.expr.CDC_Consul.Perilla-Henao_2018
Study of nitrogen effects on gene expression from chickpea genotype CDC_Consul, with reads mapped to the CDCFrontier.gnm3.ann1 genome annotation.
CDCFrontier.gnm3.ann1.expr.mixed.Sutton_2018b
Study of Phytophthora effects on gene expression from differing PRR resistance chickpea genotypes Rupali and Yorker, mapped to the CDCFrontier.gnm3.ann1 genome annotation.

Synteny

CDCFrontier.gnm1.syn.7Bqh
Synteny calculations between Cicer arietinum CDCFrontier (kabuli variety) and other species and accessions.
ICC4958.gnm2.syn.PdvJ
Synteny calculations between Cicer arietinum ICC4958 (desi variety) and other species and accessions.

Diversity

CDCFrontier.div.vonWettberg_Chang_2018
Variant data, from genome resequencing of 279 Cicer accessions, called relative to Cicer arietium CDCFrontier (kabuli type).

Cicer echinospermum

Genomes

S2Drd065.gnm1.R888
Cicer echinospermum genotype S2Drd065 genome assembly v1

Annotations

S2Drd065.gnm1.ann1.YZ9H
Cicer arietinum genotype S2Drd065 genome assembly v1 annotation v1

Cicer reticulatum

Genomes

Besev079.gnm1.2FZC
Cicer reticulatum genotype Besev079 genome assembly v1

Annotations

Besev079.gnm1.ann1.F01Z
Cicer reticulatum annotation v1 for genotype Besev079 genome assembly v1