Data Collections

Arachis data collections

Arachis hypogaea

Genomes

Tifrunner.gnm2.J5K5
Genome assembly 2 for Arachis hypogaea, cultivar Tifrunner. This version has structural changes relative to assembly 1.
Shitouqi.gnm1.L4VP
Genome assembly for peanut cultivar Shitouqui, from Zhuang et al., 2019.
Fuhuasheng.gnm1.XX5Y
Genome assembly for tetraploid peanut cultivar Fuhuasheng, from Chen et al., 2019
Tifrunner.gnm1.KYV3
Genome assembly 1 for Arachis hypogaea, cultivar Tifrunner
BaileyII.gnm1.1JTF
Arachis hypogaea accession Bailey II, genome assembly 1

Annotations

Tifrunner.gnm2.ann2.PVFB
Annotation 2, using the BIND pipeline, for Arachis hypogaea, cultivar Tifrunner
Tifrunner.gnm1.ann1.CCJH
Arachis hypogaea accession Tifrunner annotation files from genome assembly 1.0
Tifrunner.gnm2.ann1.4K0L
Gene models for genome assembly 2 for Arachis hypogaea, cultivar Tifrunner.
BaileyII.gnm1.ann1.PQM7
Annotation 1 for Arachis hypogaea accession Bailey II, genome assembly 1

Expression

Tifrunner.gnm2.ann2.expr.Tifrunner.Clevenger_2016
A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea

Markers

Tifrunner.gnm1.mrk.Axiom_Arachis2
Axiom_Arachis2 is a SNP marker set developed by Clevenger, et al. DOI:10.1016/j.molp.2016.11.015
Tifrunner.gnm1.mrk.Axiom_Arachis_58K
Axiom_Arachis_58K is a high-density SNP array with 58,233 SNPs reduced from 163,782 SNPs derived from DNA resequencing and RNA-sequencing of 41 groundnut accessions and wild diploid ancestors.
Tifrunner.gnm1.mrk.Agarwal_Clevenger_2018
Genetic map of Tifrunner x GT-C20 for the study of early and late leaf spots (ELS and LLS) and tomato spotted wilt virus (TSWV).

Diversity

aradu1_araip1.gnm1.div.Clevenger_Korani_2018
Genotyping of African germplasm collection
aradu1_araip1.gnm1.div.Otyama_Kulkarni_2020
Diversity data for the U.S. peanut core collection, genotyped relative to the diploid A. duranensis and A. ipaensis genome assemblies.
aradu1_araip1.gnm1.div.Otyama_Wilkey_2019
Genotype data for US Peanut Mini Core collection.

Arachis duranensis

Genomes

V14167.gnm2.J7QH
Genome assembly 2 for Arachis duranensis, accession V14167
V14167.gnm1.SWBf
Genome assembly 1 for Arachis duranensis, accession V14167

Annotations

V14167.gnm1.ann1.cxSM
genome annotations

Markers

V14167.gnm1.mrk.Li_Cui_2022
Markers from the Affymetrix version 2.0 SNP array mapped to the Arachis duranensis V14167 v1.0 assembly.

Synteny

V14167.gnm1.syn.qmkW
Synteny mappings among the genomes. See genome assemblies indicated in the synteny comparisons.

Arachis ipaensis

Genomes

K30076.gnm2.1GWY
Genome Assembly 2 for A. ipaensis K30076. A high-quality chromosome-scale assembly, based on PacBio RSII and Sequel reads, ordered into pseudomolecules by Dovetail using Hi-C Chicago libraries and the HiRise and SNAP.
K30076.gnm1.bXJ8
Genome assembly 1 for Arachis ipaensis, accession K30076.

Annotations

K30076.gnm1.ann1.J37m
genome annotations for Arachis ipaensis K30076.gnm1.ann1

Markers

K30076.gnm1.mrk.Li_Cui_2022
Markers from the Affymetrix version 2.0 SNP array mapped to the Arachis ipaensis K30076 v1.0 assembly.

Synteny

K30076.gnm1.syn.S8s4
Synteny mappings among the genomes. See genome assemblies indicated in the synteny comparisons.

Arachis cardenasii

Genomes

K10017.gnm1.DQ4M
Genome assembly 1 for Arachis cardenasii, accession K10017

Arachis stenosperma

Genomes

V10309.gnm1.PFL2
Genome assembly 1 for Arachis stenosperma, genotype V10309

Annotations

V10309.gnm1.ann1.CZRZ
GenBank RefSeq annotation for Genome assembly 1 for Arachis stenosperma, genotype V10309