LIS: Legume Information System
Information about legume traits for crop improvement
Home
Taxa
Arachis (Peanut)
Cajanus (Pigeonpea)
Cicer (Chickpea)
Glycine (Soybean)
Lotus (Bird's-foot trefoil)
Lupinus (Lupin grain legumes)
Medicago (Alfalfa/Lucerne, Barrel Medic)
Phaseolus (Common Bean, Lima Bean, Tepary Bean, etc.)
Pisum (Pea)
Trifolium (Clover)
Vigna (Cowpea)
OTHERS (Many special-focus species and collections)
Tools
LIS Datastore
LIS InterMines
DSCensor Data Overviews
Gene Search Tool
LIS SequenceServer BLAST
Funnotate: Annotate Your Sequences
Genome Context Viewer
ZZBrowse GWAS/QTL
CMap: Genetic Map Viewer
LIS Germplasm GIS Viewer
Conekt Comparative Expression
Gene Family Search
GCViT: SNP Comparison Tool
Download
Community
Contact
Home
Taxa
Arachis (Peanut)
Cajanus (Pigeonpea)
Cicer (Chickpea)
Glycine (Soybean)
Lotus (Bird's-foot trefoil)
Lupinus (Lupin grain legumes)
Medicago (Alfalfa/Lucerne, Barrel Medic)
Phaseolus (Common Bean, Lima Bean, Tepary Bean, etc.)
Pisum (Pea)
Trifolium (Clover)
Vigna (Cowpea)
OTHERS (Many special-focus species and collections)
Tools
LIS Datastore
LIS InterMines
DSCensor Data Overviews
Gene Search Tool
LIS SequenceServer BLAST
Funnotate: Annotate Your Sequences
Genome Context Viewer
ZZBrowse GWAS/QTL
CMap: Genetic Map Viewer
LIS Germplasm GIS Viewer
Conekt Comparative Expression
Gene Family Search
GCViT: SNP Comparison Tool
Download
Community
Contact
Home
Taxa
Arachis (Peanut)
Cajanus (Pigeonpea)
Cicer (Chickpea)
Glycine (Soybean)
Lotus (Bird's-foot trefoil)
Lupinus (Lupin grain legumes)
Medicago (Alfalfa/Lucerne, Barrel Medic)
Phaseolus (Common Bean, Lima Bean, Tepary Bean, etc.)
Pisum (Pea)
Trifolium (Clover)
Vigna (Cowpea)
OTHERS (Many special-focus species and collections)
Tools
LIS Datastore
LIS InterMines
DSCensor Data Overviews
Gene Search Tool
LIS SequenceServer BLAST
Funnotate: Annotate Your Sequences
Genome Context Viewer
ZZBrowse GWAS/QTL
CMap: Genetic Map Viewer
LIS Germplasm GIS Viewer
Conekt Comparative Expression
Gene Family Search
GCViT: SNP Comparison Tool
Download
Community
Contact
Twitter
GitHub
Tools
Download / Query
LIS Datastore
LIS InterMines
DSCensor Data Overviews
Search
Gene Search Tool
Sequence search
LIS SequenceServer BLAST
Funnotate: Annotate Your Sequences
Visualize / Browse
Genome Context Viewer
ZZBrowse GWAS/QTL
CMap: Genetic Map Viewer
LIS Germplasm GIS Viewer
Conekt Comparative Expression
Gene Family Search
GCViT: SNP Comparison Tool
Informatic Tools
Download / Query
LIS Datastore
Browser interface to all of the files in the Legume Information System.
LIS InterMines
LIS InterMines: one mine per genus including genetic data, and an overall LegumeMine with genome annotations. Tools include a powerful query engine.
DSCensor Data Overviews
Overviews of data characteristics at LIS: genome assembly sizes, gene counts, BUSCO coverage, etc.
Search
Gene Search Tool
Search for genes
Sequence search
LIS SequenceServer BLAST
Run BLASTs against LIS genomes, CDSes, and proteins
Funnotate: Annotate Your Sequences
Functional annotation of protein or nucleotide sequences, and placement into gene trees
Visualize / Browse
Genome Context Viewer
Browser for dynamically discovering and viewing genomic synteny across selected species.
ZZBrowse GWAS/QTL
Interactive visualization of multiple GWAS and QTL data sets, using synteny to identify potentially conserved association regions between species.
CMap: Genetic Map Viewer
View genetic and comparative maps.
LIS Germplasm GIS Viewer
View GIS location information for legume accessions.
Conekt Comparative Expression
Conekt is a tool for comparative gene expression analysis.
Gene Family Search
Functional keyword search for gene families
GCViT: SNP Comparison Tool
A multiple chromosome visualisation tool for visualizing resequencing or SNP array data