Data Collections

Glycine data collections

Glycine max

Genomes

FiskebyIII.gnm1.F177
Glycine max genotype Fiskeby III genome assembly v1.0
Hefeng25_IGA1002.gnm1.L69T
Genome assembly files for cultivar Hefeng 25 (Hefeng25_IGA1002 in publication; WHFS_GmHF25_1.0 in the GenBank assembly record), Chu et al. (2021)
Huaxia3_IGA1007.gnm1.RGGN
Genome assembly files for cultivar Huaxia3 (Huaxia3_IGA1007 in publication; WHFS_GmHX3_1.0 in the GenBank assembly record), Chu et al. (2021)
Jinyuan_IGA1006.gnm1.LXM0
Genome assembly files for cultivar Jinyuan (Jinyuan_IGA100 in the publication; 6HFS_GmJY_1.0 in the GenBank assembly record), Chu et al. (2021)
Lee.gnm1.BXNC
Genome assembly
Lee.gnm2.K7BV
Glycine max genotype Lee genome assembly v2.0
Wenfeng7_IGA1001.gnm1.L0QH
Genome assembly files for cultivar Wenfeng 7 (Wenfeng7_IGA1001 in publication; WHFS_GmWF7_1.0 in the GenBank assembly record); Chu et al. (2021)
Wm82.gnm1.FCtY
Glycine max accession Williams genome assembly v1.0
Wm82.gnm2.DTC4
Glycine max accession Williams 82 genome assembly v2.0
Wm82.gnm4.4PTR
Glycine max accession Williams 82 genome assembly v4.0
Wm82_IGA1008.gnm1.5CQQ
Genome assembly files for cultivar Williams 82 (Wm82_IGA1008 in publication; WHFS_GmW82_1.0 in the GenBank assembly record), Chu et al. (2021)
Zh13.gnm1.N6C8
Genome assembly files for cultivar Zhonghuang 13, Shen et al. (2018)
Zh13.gnm2.LV9P
Genome assembly version 2 files for cultivar Zhonghuang 13, Shen et al. (2019)
Zh13_IGA1005.gnm1.FRXQ
Genome assembly files for cultivar Zhonghuang 13 (Zh13_IGA1005 in publication; WHFS_GmZH13_1.0 in the GenBank assembly record), Chu et al. (2021)
Zh35_IGA1004.gnm1.DBYJ
Genome assembly files for cultivar Zhonghuang 35 (Zh35_IGA1004 in publication; WHFS_GmZH35_1.0 in the GenBank assembly record), Chu et al. (2021)

Annotations

FiskebyIII.gnm1.ann1.SS25
Genome annotation files for Glycine max genotype Fiskeby III, Stupar et al. (2020)
Hefeng25_IGA1002.gnm1.ann1.320V
Genome annotation files for cultivar Hefeng 25, Chu et al (2021)
Huaxia3_IGA1007.gnm1.ann1.LKC7
Genome annotation files for cultivar Huaxia3, Chu et al. (2021)
Jinyuan_IGA1006.gnm1.ann1.2NNX
Genome annotation files for cultivar Jinyuan, Chu et al. (2021)
Lee.gnm1.ann1.6NZV
Glycine max accession Lee genome annotation files; JGI annotation version 1 on assembly version 1
Lee.gnm2.ann1.1FNT
genome annotation of Glycine max Lee
Wenfeng7_IGA1001.gnm1.ann1.ZK5W
Genome annotation files for cultivar Wenfeng 7, Chu et al. (2021)
Wm82.gnm1.ann1.DvBy
Glycine max accession Williams genome annotation files
Wm82.gnm2.ann1.RVB6
Glycine max accession Williams genome annotation files; JGI annotation version 1 on assembly 2
Wm82.gnm2.ann2.BG1Q
NCBI Glycine max Annotation Release 103; JGI assembly Glycine max version 2 on assembly 1
Wm82.gnm4.ann1.T8TQ
Glycine max accession Williams genome annotation files; JGI annotation version 1 on assembly 4
Wm82_IGA1008.gnm1.ann1.FGN6
Genome annotation files for cultivar William 82, Chu et al. (2021)
Zh13.gnm1.ann1.8VV3
Genome annotation files for cultivar Zhonghuang 13, Shen et al. (2018)
Zh13.gnm2.ann1.FJ3G
Genome annotation files for cultivar Zhonghuang 13, Shen et al. (2019)
Zh13_IGA1005.gnm1.ann1.87Z5
Genome annotation files for cultivar Zhonghuang 13, Chu et al. (2021)
Zh35_IGA1004.gnm1.ann1.RGN6
Genome annotation files for cultivar Zhonghuang 35, Chu et al. (2021)

Expression

Wm82.gnm1.ann1.expr.Z679
Cystatin expression during 3 root nodule development stages : vegetative, reproductive and senescence (Van Wyk et. al. 2014).
Wm82.gnm2.ann1.expr.G7ZY
Soybean gene expression atlas from 14 conditions (Libault et al., 2010).

GWAS and QTL Studies

0518BW-8_x_0734BW-1.gen.Oyoo_Benitez_2011
QTL Analysis of Soybean Seed Coat Discoloration Associated with II TT Genotype
93705KS4895_x_Jackson.gen.Hwang_King_2015
Confirmation of delayed canopy wilting QTLs from multiple soybean mapping populations.
A5403_x_Archer.gen.Cornelious_Chen_2005
Identification of QTLs Underlying Water-Logging Tolerance in Soybean
A81356022_x_A81356022.gen.Keim_Diers_1990
RFLP mapping in soybean: association between marker loci and variation in quantitative traits.
A81356022_x_PI468916.gen.Diers_Cianzio_1992
Possible identification of quantitative trait loci affecting iron efficiency in soybean
A81356022_x_PI468916.gen.Diers_Keim_1992
RFLP analysis of soybean seed protein and oil content
A81356022_x_PI468916.gen.Diers_Shoemaker_1992
Restriction fragment length polymorphism analysis of soybean fatty acid content
A81356022_x_PI468916.gen.Keim_Diers_1990
Genetic analysis of soybean hard seededness with molecular markers
A95-684043_x_LS94-3207.gen.Swaminathan_Abeysekara_2016
Quantitative trait loci underlying host responses of soybean to Fusarium virguliforme toxins that cause foliar sudden death syndrome
A95-684043_x_LS98-0582.gen.Swaminathan_Abeysekara_2018
Mapping of new quantitative trait loci for sudden death syndrome and soybean cyst nematode resistance in two soybean populations
A96-492058_x_A97-775026.gen.Hoeck_2002
Molecular marker analysis of seed size in soybean
AC756_x_RCATAngora.gen.Primomo_Poysa_2006
Mapping QTL for Individual and Total Isoflavone Content in Soybean Seeds
AGSBoggs-RR_x_CX1834-1-2.gen.Walker_Scaboo_2006
Genetic Mapping of Loci Associated with Seed Phytic Acid Content in CX1834‐1‐2 Soybean
Anoka_x_A7.gen.Lin_Baumer_2000
Nutrient solution screening of Fe chlorosis resistance in soybean evaluated by molecular characterization
Anoka_x_A7.gen.Peiffer_King_2012
Identification of Candidate Genes Underlying an Iron Efficiency Quantitative Trait Locus in Soybean
Archer_x_Minsoy.gen.VanToai_St.-Martin_2001
Identification of a QTL Associated with Tolerance of Soybean to Soil Waterlogging
BARC-8_x_Garimpo.gen.Vieira_Oliveira_2006
Use of the QTL approach to the study of soybean trait relationships in two populations of recombinant inbred lines at the F7 and F8 generations
BD2_x_BX10.gen.Liang_Cheng_2010a
QTL analysis of root traits as related to phosphorus efficiency in soybean
BD2_x_BX10.gen.Liang_Cheng_2010b
QTL analysis of root traits as related to phosphorus efficiency in soybean
BSR101_x_LG82-8379.gen.Kabelka_Diers_2004
Putative Alleles for Increased Yield from Soybean Plant Introductions
BSR101_x_PI437654.gen.Klos_Paz_2000
Molecular Markers Useful for Detecting Resistance to Brown Stem Rot in Soybean
Bell_x_Colfax.gen.Glover_Wang_2004
Near Isogenic Lines Confirm a Soybean Cyst Nematode Resistance Gene from PI 88788 on Linkage Group J
Bell_x_Colfax.gen.Patzoldt_Grau_2005
Localization of a Quantitative Trait Locus Providing Brown Stem Rot Resistance in the Soybean Cultivar Bell
BenningPI595645_x_DanbaekkongPI619083.gen.Warrington_Abdel-Haleem_2015
QTL for seed protein and amino acids in the Benning × Danbaekkong soybean population
BenningPI595645_x_PI416937.gen.Abdel-Haleem_Lee_2011
Identification of QTL for increased fibrous roots in soybean
BenningPI595645_x_PI416937.gen.Carpentieri-Pipolo_Pipolo_2012
Identification of QTLs associated with limited leaf hydraulic conductance in soybean
Benning_x_PI416937.gen.Abdel-Haleem_Carter_2012
Mapping of quantitative trait loci for canopy-wilting trait in soybean (Glycine max L. Merr)
Birsasoya-1_x_JS71-05.gen.Singh_Raipuria_2008
SSR markers associated with seed longevity in soybean
Bogao_x_Nannong94-156.gen.Jun_Freewalt_2014
Identification of novel QTL for leaf traits in soybean
Bossier_x_Embrapa20.gen.Santos_Geraldi_2013
Mapping of QTLs associated with biological nitrogen fixation traits in soybean
CNS_x_PI230977.gen.Tamulonis_Luzzi_1997a
DNA Markers Associated with Resistance to Javanese Root‐Knot Nematode in Soybean
CNS_x_PI230977.gen.Tamulonis_Luzzi_1997b
RFLP Mapping of Resistance to Southern Root‐Knot Nematode in Soybean
CSSL3228_x_NN1138D2.gen.Zhang_Wang_2018
Combining QTL-seq and linkage mapping to fine map a wild soybean allele characteristic of greater plant height
CX1834-1-2_x_5601T.gen.Scaboo_Pantalone_2009
Confirmation of Molecular Markers and Agronomic Traits Associated with Seed Phytate Content in Two Soybean RIL Populations
CX1834-1-6_x_V99-3337.gen.Gao_Biyashev_2008
Validation of Low-Phytate QTLs and Evaluation of Seedling Emergence of Low-Phytate Soybeans
Chamame_x_Laco-1.gen.Juwattanasomran_Somta_2012
Identification of a new fragrance allele in soybean and development of its functional marker
Charleston_x_DongNong594.gen.Teng_Han_2009
QTL analyses of seed weight during the development of soybean (Glycine max L. Merr.)
Charleston_x_DongNong594.gen.Yang_Xin_2013
Identification of QTLs for seed and pod traits in soybean and analysis for additive effects and epistatic effects of QTLs among multiple environments.
Charleston_x_Dongnong.gen.Qi_Wu_2011
Soybean oil content QTL mapping and integrating with meta-analysis method for mining genes
Charleston_x_Dongnong594.gen.Qi_Hou_2014
Identification of quantitative trait loci (QTLs) for seed protein concentration in soybean and analysis for additive effects and epistatic effects of QTLs under multiple environments
Charleston_x_Dongnong594.gen.Sun_Li_2006
Quantitative trait loci analysis for the developmental behavior of Soybean (Glycine max L. Merr.)
Charleston_x_Dongnong594.gen.Sun_Pan_2012
Multi-environment mapping and meta-analysis of 100-seed weight in soybean
Cobb_x_PI171451.gen.Rector_All_1999
Quantitative Trait Loci for Antixenosis Resistance to Corn Earworm in Soybean
Cobb_x_PI229358.gen.Narvel_Walker_2001
A Retrospective DNA Marker Assessment of the Development of Insect Resistant Soybean
Cobb_x_PI229358.gen.Rector_All_1998
Identification of molecular markers linked to quantitative trait loci for soybean resistance to corn earworm
Cobb_x_PI229358.gen.Rector_All_2000
Quantitative Trait Loci for Antibiosis Resistance to Corn Earworm in Soybean
Conrad_x_Harosoy.gen.Burnham_Dorrance_2003
Quantitative Trait Loci for Partial Resistance to Phytophthora sojae in Soybean
Conrad_x_Hefeng25.gen.Mideros_Nita_2007
Characterization of Components of Partial Resistance, Rps2, and Root Resistance to Phytophthora sojae in Soybean
Conrad_x_OX760-6-1.gen.Han_Teng_2008
Mapping QTL tolerance to Phytophthora root rot in soybean using microsatellite and RAPD/SCAR derived markers
Conrad_x_OX760-6-1.gen.Weng_Yu_2007
A quantitative trait locus influencing tolerance to Phytophthora root rot in the soybean cultivar ‘Conrad’
Conrad_x_Sloan.gen.Ellis_Wang_2012
Identification of Soybean Genotypes Resistant toFusarium graminearumand Genetic Mapping of Resistance Quantitative Trait Loci in the Cultivar Conrad
Conrad_x_Sloan.gen.Wang_St.-Martin_2012
Comparison of Phenotypic Methods and Yield Contributions of Quantitative Trait Loci for Partial Resistance toPhytophthora sojaein Soybean
Conrad_x_Sloan.gen.Wang_Waller_2010
Analysis of Genes Underlying Soybean Quantitative Trait Loci Conferring Partial Resistance to Phytophthora sojae
Conrad_x_Sloan.gen.Wang_Wijeratne_2012a
Dissection of two soybean QTL conferring partial resistance to Phytophthora sojae through sequence and gene expression analysis
Conrad_x_Sloan.gen.Wang_Wijeratne_2012b
Dissection of two soybean QTL conferring partial resistance to Phytophthora sojae through sequence and gene expression analysis
Cook_x_N87-2122-4.gen.Li_Wilson_2002
Molecular Mapping Genes Conditioning Reduced Palmitic Acid Content in N87-2122-4 Soybean
DongNong1068_x_DongNong8004.gen.Zhao_Wang_2008
Identification of QTL underlying the resistance of soybean to pod borer, Leguminivora glycinivorella (Mats.) obraztsov, and correlations with plant, pod and seed traits
DongNong46_x_KenJian23.gen.Mao_Jiang_2013
Identification of quantitative trait loci underlying seed protein and oil contents of soybean across multi-genetic backgrounds and environments
Douglas_x_Pyramid.gen.Njiti_Meksem_2002
Common loci underlie field resistance to soybean sudden death syndrome in Forrest, Pyramid, Essex, and Douglas
DunbarPI552538_x_GsojaPI326582A.gen.Manavalan_Prince_2015
Identification of Novel QTL Governing Root Architectural Traits in an Interspecific Soybean Population
Elgin_x_PI436684.gen.Kim_Diers_2012a
Identification of positive yield QTL alleles from exotic soybean germplasm in two backcross populations
Elgin_x_PI436684.gen.Kim_Diers_2012b
Identification of positive yield QTL alleles from exotic soybean germplasm in two backcross populations
Embrapa20_x_BRS133.gen.Nicolás_Hungria_2005
Identification of quantitative trait loci controlling nodulation and shoot mass in progenies from two Brazilian soybean cultivars
Essex_x_Forrest.gen.Brensha_Kantartzi_2017
Genetic Analysis of Root and Shoot Traits in the 'Essex' by 'Forrest' Recombinant Inbred Line (RIL) Population of Soybean [Glycine max (L.) Merr.]
Essex_x_Forrest.gen.Chang_Doubler_1996
Two Additional Loci underlying Durable Field Resistance to Soybean Sudden Death Syndrome (SDS)
Essex_x_Forrest.gen.Chang_Doubler_1997
Association of Loci Underlying Field Resistance to Soybean Sudden Death Syndrome (SDS) and Cyst Nematode (SCN) Race 3
Essex_x_Forrest.gen.Cho_Njiti_2002
Quantitative Trait Loci Associated with Foliar Trigonelline Accumulation inGlycine MaxL
Essex_x_Forrest.gen.Hnetkovsky_Chang_1996
Genetic Mapping of Loci underlying Field Resistance to Soybean Sudden Death Syndrome (SDS)
Essex_x_Forrest.gen.Iqbal_Meksem_2001
Microsatellite markers identify three additional quantitative trait loci for resistance to soybean sudden-death syndrome (SDS) in Essex × Forrest RILs
Essex_x_Forrest.gen.Josie_Alcivar_2007
Research Article: Genomic regions containing QTL for plant height, internodes length, and flower color in soybean [Glycine max (L.) Merr]
Essex_x_Forrest.gen.Kassem_Meksem_2004a
Definition of Soybean Genomic Regions That Control Seed Phytoestrogen Amounts
Essex_x_Forrest.gen.Kassem_Meksem_2004b
Loci underlying resistance to manganese toxicity mapped in a soybean recombinant inbred line population of `Essex' x `Forrest'
Essex_x_Forrest.gen.Meksem_Doubler_1999
Clustering among loci underlying soybean resistance to Fusarium solani, SDS and SCN in near-isogenic lines
Essex_x_Forrest.gen.Meksem_Pantazopoulos_2001
’Forrest’ resistance to the soybean cyst nematode is bigenic: saturation mapping of the Rhg1and Rhg4 loci
Essex_x_Forrest.gen.Sharma_Sharma_2011
The genetic control of tolerance to aluminum toxicity in the ‘Essex’ by ‘Forrest’ recombinant inbred line population
Essex_x_Forrest.gen.Yesudas_Sharma_2010
Identification of QTL in soybean underlying resistance to herbivory by Japanese beetles (Popillia japonica, Newman).
Essex_x_Forrest.gen.Yuan_Njiti_2002
Quantitative trait loci in Two Soybean Recombinant Inbred Line Populations Segregating for Yield and Disease Resistance
Essex_x_PI437654.gen.Gutierrez-Gonzalez_Wu_2009
Genetic control of soybean seed isoflavone content: importance of statistical model and epistasis in complex traits
Essex_x_PI437654.gen.Gutierrez-Gonzalez_Wu_2010
Intricate environment-modulated genetic networks control isoflavone accumulation in soybean seeds
Essex_x_Williams.gen.Hyten_Pantalone_2004a
Molecular mapping and identification of soybean fatty acid modifier quantitative trait loci
Essex_x_Williams.gen.Hyten_Pantalone_2004b
Seed quality QTL in a prominent soybean population
Evans_x_PI88788.gen.Concibido_Young_1996
Targeted comparative genome analysis and qualitative mapping of a major partial-resistance gene to the soybean cyst nematode
Evans_x_Peking.gen.Concibido_Lange_1997
Genome Mapping of Soybean Cyst Nematode Resistance Genes in ‘Peking’, PI 90763, and PI 88788 Using DNA Markers
FiskbeyIII_x_Williams82.gen.Do_Vuong_2018
Mapping and confirmation of loci for salt tolerance in a novel soybean germplasm, Fiskeby III
FiskebyIII_x_Mandarin.gen.Burton_Burkey_2016
Phenotypic variation and identification of quantitative trait loci for ozone tolerance in a Fiskeby III × Mandarin (Ottawa) soybean population
FiskebyIII_x_Mandarin.gen.Hacisalihoglu_Burton_2018
Quantitative trait loci associated with soybean seed weight and composition under different phosphorus levels
Flyer_x_Hartwig.gen.Kazi_Shultz_2008
Separate loci underlie resistance to root infection and leaf scorch during soybean sudden death syndrome
Flyer_x_Hartwig.gen.Prabhu_Njiti_1999
Selecting Soybean Cultivars for Dual Resistance to Soybean Cyst Nematode and Sudden Death Syndrome Using Two DNA Markers
Fukuyutaka_x_Himeshirazu.gen.Oki_Komatsu_2012
Genetic analysis of antixenosis resistance to the common cutworm (Spodoptera litura Fabricius) and its relationship with pubescence characteristics in soybean (Glycine max (L.) Merr.).
GD2422_x_LD01-5907.gen.Tan_Serven_2018
QTL mapping and epistatic interaction analysis of field resistance to sudden death syndrome (Fusarium virguliforme) in soybean
Glycinemaxvariety7499_x_GlycinesojaPI245331.gen.Li_Pfeiffer_2008
Soybean QTL for Yield and Yield Components Associated with Glycine soja Alleles
Hamilton_x_PI90763.gen.Guo_Sleper_2005
Identification of QTLs associated with resistance to soybean cyst nematode races 2, 3 and 5 in soybean PI 90763.
Hamilton_x_PI90763.gen.Guo_Sleper_2006
Identification of QTLs associated with resistance to soybean cyst nematode races 2, 3 and 5 in soybean PI 90763
Harosoy_x_Fukuyutaka.gen.Benitez_Hajika_2010
A Major QTL Controlling Seed Cadmium Accumulation in Soybean
Hartwig_x_Flyer.gen.Kazi_Shultz_2010
Iso-lines and inbred-lines confirmed loci that underlie resistance from cultivar ‘Hartwig’ to three soybean cyst nematode populations
Hartwig_x_Williams82.gen.Vierling_Faghihi_1996
Association of RFLP markers with loci conferring broad-based resistance to the soybean cyst nematode (Heterodera glycines)
Hartwig_x_Y23.gen.Ferreira_Cervigni_2011
QTLs for resistance to soybean cyst nematode, races 3, 9, and 14 in cultivar Hartwig
Hayahikari_x_Toyomusume.gen.Funatsuki_Ishimoto_2006
Simple sequence repeat markers linked to a major QTL controlling pod shattering in soybean
HeFeng25_x_DongnongL-5.gen.Xie_Han_2012
SSR- and SNP-related QTL underlying linolenic acid and other fatty acid contents in soybean seeds across multiple environments
Hefeng25_x_Conrad.gen.Han_Li_2012
QTL analysis of soybean seed weight across multi-genetic backgrounds and environments
Hefeng25_x_MapleArrow.gen.Li_Sun_2010
Identification of QTL underlying soluble pigment content in soybean stems related to resistance to soybean white mold (Sclerotinia sclerotiorum)
Hefeng25_x_OACBayfield.gen.Li_Wang_2016
Mapping quantitative trait loci (QTLs) underlying seed vitamin E content in soybean with main, epistatic and QTL × environment effects
Hefeng45_x_Dongnong48.gen.yang_Ding_2017
Identification of QTL underlying soybean agglutinin content in soybean seeds and analysis for epistatic effects among multiple genetic backgrounds and environments
Huachun_x_Wayao.gen.Cai_Cheng_2018
Fine-mapping of QTLs for individual and total isoflavone content in soybean (Glycine max L.) using a high-density genetic map
Hwangkeum_x_IT182932.gen.Yang_Moon_2011
Novel major quantitative trait loci regulating the content of isoflavone in soybean seeds
IA2008_x_PI468916.gen.Wang_Graef_2004a
Identification of putative QTL that underlie yield in interspecific soybean backcross populations
IA2008_x_PI468916.gen.Wang_Graef_2004b
Identification of putative QTL that underlie yield in interspecific soybean backcross populations
Ippon-Sangoh_x_Fukuyutaka.gen.Komatsu_Hwang_2012
Identification of QTL controlling post-flowering period in soybean
Iyodaizu_x_Tachinagaha.gen.Van_Takahashi_2017
Mapping quantitative trait loci for root development under hypoxia conditions in soybean (Glycine max L. Merr.).
JP036034_x_Ryuhou.gen.Wang_Chen_2015
Identification of Quantitative Trait Loci for Oil Content in Soybean Seed
JP110755_x_Fukuyutaka.gen.Kuroda_Kaga_2013
QTL affecting fitness of hybrids between wild and cultivated soybeans in experimental fields
JWS156-1_x_Jackson.gen.Tuyen_Lal_2010
Identification of a major QTL allele from wild soybean (Glycine soja Sieb. & Zucc.) for increasing alkaline salt tolerance in soybean
Jackson_x_JWS156-1.gen.Hamwieh_Xu_2008
Conserved salt tolerance quantitative trait locus (QTL) in wild and cultivated soybeans
Jidou12_x_JiNF58.gen.Shi_Yan_2018
Identification of a major quantitative trait locus underlying salt tolerance in ‘Jidou 12’ soybean cultivar
Jidou9_x_ZYD2738.gen.Yan_Li_2014
Identification and validation of an over-dominant QTL controlling soybean weight using populations derived from Glycine max x Glycine soja
Jindou23_x_Huibuzhi.gen.LIANG_YU_2010
QTL Mapping of Isoflavone, Oil and Protein Contents in Soybean (Glycine max L. Merr.)
JindouNo6PI574484_x_197PI471938.gen.Hamwieh_Tuyen_2011
Identification and validation of a major QTL for salt tolerance in soybean
Jingdou23_x_ZDD2315.gen.Liang_Yu_2014
Inheritance and QTL mapping of related root traits in soybean at the seedling stage
Jinpumkong2_x_SS2-2.gen.Liu_Kim_2011
QTL identification of yield-related traits and their association with flowering and maturity in soybean
Jinpumkong_x_SS2-2.gen.Liu_Kim_2011
QTL identification of flowering time at three different latitudes reveals homeologous genomic regions that control flowering in soybean
Jiyu50_x_Jinong18.gen.Yao_Liu_2015
Analysis of quantitative trait loci for main plant traits in soybean.
Jiyu69_x_SS0404-T5-76.gen.Shim_Kim_2017
Identification of QTLs for branching in soybean (Glycine max (L.) Merrill)
KF1_x_NN1138-2.gen.Li_Zhao_2011
Genetic structure composed of additive QTL, epistatic QTL pairs and collective unmapped minor QTL conferring oil content and fatty acid components of soybeans
KFNo1_x_NN1138-2.gen.Korir_Qi_2011
A study on relative importance of additive, epistasis and unmapped QTL for Aluminium tolerance at seedling stage in soybean
KS4303sp_x_PI407818B.gen.Orazaly_Chen_2015
Identification and Confirmation of Quantitative Trait Loci Associated with Soybean Seed Hardness
KS4895_x_Jackson.gen.Charlson_Bhatnagar_2009
Polygenic inheritance of canopy wilting in soybean [Glycine max (L.) Merr.]
KS4895_x_Jackson.gen.Hwang_Ray_2014
Genetics and mapping of quantitative traits for nodule number, weight, and size in soybean (Glycine max L.[Merr.])
Kaori_x_ChiangMai60.gen.Juwattanasomran_Somta_2011
A SNP in GmBADH2 gene associates with fragrance in vegetable soybean variety “Kaori” and SNAP marker development for the fragrance
Karafuto-1_x_Toyosuzu.gen.Khan_Githiri_2008
QTL analysis of cleistogamy in soybean
Keburi_x_Mosshokutou.gen.Choi_Mano_2010
Identification of QTLs controlling somatic embryogenesis using RI population of cultivar × weedy soybean
Kefeng1_x_Nannon1138-2.gen.Du_Wang_2009
Mapping QTLs for seed yield and drought susceptibility index in soybean (Glycine max L.) across different environments
Kefeng1_x_Nannong1138-2.gen.DU_YU_2009
Analysis of QTLs for the Trichome Density on the Upper and Downer Surface of Leaf Blade in Soybean [Glycine max (L.) Merr.]
KefengNo1_x_1138-2.gen.Gai_Wang_2007
A comparative study on segregation analysis and QTL mapping of quantitative traits in plants—with a case in soybean
KefengNo1_x_Nannong.gen.Li_Wang_2005
QTL mapping of phosphorus deficiency tolerance in soybean (Glycine max L. Merr.)
KefengNo1_x_Nannong1138-2.gen.Ma_Kan_2016
Quantitative Trait Loci (QTL) Mapping for Glycinin and β-Conglycinin Contents in Soybean (Glycine max L. Merr.)
KefengNo1_x_Nannong1138-2.gen.Yan_Wang_2015
Detection and fine‐mapping of SC7 resistance genes via linkage and association analysis in soybean
KefengNo1_x_Nannong1138-2.gen.Yang_Zhao_2011
Mapping QTLs for tissue culture response in soybean (Glycine max (L.) Merr.)
KefengNo1_x_Nannong1138-2.gen.Yin_Meng_2010
Mapping quantitative trait loci associated with chlorophyll a fluorescence parameters in soybean (Glycine max (L.) Merr.).
KefengNo1_x_Nannong1138-2.gen.Zhang_Wang_2004
QTL mapping of ten agronomic traits on the soybean (Glycine max L. Merr.) genetic map and their association with EST markers
Kenjian4_x_Fengshou24.gen.Hu_Zhang_2013
Determination of the genetic architecture of seed size and shape via linkage and association analysis in soybean (Glycine max L. Merr.)
Kenjian4_x_Fengshou24.gen.Wu_Xu_2012
Mapping QTLs for Phosphorus-deficiency Tolerance in Soybean at Seedling Stage
Kenwood_x_LG94-1713.gen.Guzman_Diers_2007
QTL Associated with Yield in Three Backcross-Derived Populations of Soybean
Keunol_x_Iksan10.gen.Lee_Kim_2016
Positional mapping and identification of novel quantitative trait locus responsible for UV-B radiation tolerance in soybean [Glycine max (L.) Merr.]
Keunolkong_x_Iksan10.gen.Kim_Kim_2010
Analysis of Quantitative Trait Loci (QTLs) for Seed Size and Fatty Acid Composition Using Recombinant Inbred Lines in Soybean
Keunolkong_x_Iksan10.gen.Shim_Ha_2015
Detection of quantitative trait loci controlling UV-B resistance in soybean
Keunolkong_x_Shinpaldalkong.gen.Kim_Kang_2005
Analysis of quantitative trait loci associated with leaflet types in two recombinant inbred lines of soybean
Keunolkong_x_Shinpaldalkong.gen.Kim_Kang_2006
Mapping of putative quantitative trait loci controlling the total oligosaccharide and sucrose content of Glycine max seeds
Keunolkong_x_Sinpaldalkong.gen.Ha_Kim_2012
Mapping QTLs with epistatic effects and QTL-by-environment interactions for seed coat cracking in soybeans
Keunolkong_x_Sinpaldalkong.gen.Kang_Kwak_2009
Population-specific QTLs and their different epistatic interactions for pod dehiscence in soybean [Glycine max (L.) Merr.]
Kitakomachi_x_Koganejiro.gen.Githiri_Yang_2007
QTL Analysis of Low Temperature Induced Browning in Soybean Seed Coats
Kottman_x_PI391589B.gen.Guo_Wang_2008
Genetic Mapping of QTLs Underlying Partial Resistance to in Soybean PI 391589A and PI 391589B
L-10_x_Heinong37.gen.Chang_Dong_2011
QTL underlying resistance to two HG types of Heterodera glycines found in soybean cultivar 'L-10'
LD00-2817P_x_LDX01-1-65.gen.Valdés-López_Thibivilliers_2011
Identification of Quantitative Trait Loci Controlling Gene Expression during the Innate Immunity Response of Soybean    
Lineage69_x_Tucunare.gen.Leite_Pinheiro_2016
QTL mapping of soybean oil content for marker-assisted selection in plant breeding program
Lishuizhongzihuangdou_x_Nannong493-1.gen.LI_LI_2010
QTL Analysis for Dynamic Expression of Chlorophyll Content in Soybean (Glycine max L. Merr.)
Luheidou2_x_Nanhuizao.gen.Fan_Li_2015
Analysis of additive and epistatic quantitative trait loci underlying fatty acid concentrations in soybean seeds across multiple environments
M82806_x_HHP.gen.Brummer_Graef_1997
Mapping QTL for Seed Protein and Oil Content in Eight Soybean Populations
M91-212006_x_SZG9652.gen.Vollmann_Schausberger_2002
The presence or absence of the soybean Kunitz trypsin inhibitor as a quantitative trait locus for seed protein content
MD96-5722_x_Spencer.gen.Akond_Liu_2014
Identification of Quantitative Trait Loci (QTL) Underlying Protein, Oil, and Five Major Fatty Acids’ Contents in Soybean
MD96-5722_x_Spencer.gen.Anderson_Akond_2015
Quantitative trait loci underlying resistance to sudden death syndrome (SDS) in MD96-5722 by ‘Spencer’ recombinant inbred line population of soybean
MFS-553_x_PI243545.gen.Zeng_Chen_2014
Identification of Quantitative Trait Loci for Sucrose Content in Soybean Seed
MN1606SP_x_Spencer.gen.Luckew_Swaminathan_2017
‘MN1606SP’ by ‘Spencer’ filial soybean population reveals novel quantitative trait loci and interactions among loci conditioning SDS resistance
MaBelle_x_Proto.gen.Csanádi_Vollmann_2001
Seed quality QTLs identified in a molecular map of early maturing soybean
Magellan_x_PI404198A.gen.Guo_Sleper_2006
Quantitative Trait Loci underlying Resistance to Three Soybean Cyst Nematode Populations in Soybean PI 404198A
Magellan_x_PI437654.gen.Gutierrez-Gonzalez_Vuong_2011
Major locus and other novel additive and epistatic loci involved in modulation of isoflavone concentration in soybean seeds
Magellan_x_PI438489B.gen.Vuong_Sleper_2011
Confirmation of quantitative trait loci for resistance to multiple-HG types of soybean cyst nematode (Heterodera glycines Ichinohe)
Magellan_x_PI567516C.gen.Vuong_Sleper_2010
Novel quantitative trait loci for broad-based resistance to soybean cyst nematode (Heterodera glycines Ichinohe) in soybean PI 567516C
MapleDonovan_x_OACBayfield.gen.Huynh_Bastien_2010
Identification of QTLs Associated with Partial Resistance to White Mold in Soybean Using Field-Based Inoculation
Merit_x_PI194639.gen.Vuong_Diers_2008
Identification of QTL for Resistance to Sclerotinia Stem Rot in Soybean Plant Introduction 194639
Minsoy_x_Archer.gen.Orf_Chase_1999a
Genetics of Soybean Agronomic Traits: I. Comparison of Three Related Recombinant Inbred Populations
Minsoy_x_Archer.gen.Orf_Chase_1999b
Genetics of Soybean Agronomic Traits: II. Interactions between Yield Quantitative Trait Loci in Soybean
Minsoy_x_Archer.gen.Stombaugh_Orf_2004
Quantitative Trait Loci Associated with Cell Wall Polysaccharides in Soybean Seed
Minsoy_x_Noir1.gen.Njiti_Lightfoot_2006
Genetic analysis infers Dt loci underlie resistance to Fusarium solani f. sp. glycines in indeterminate soybeans
Minsoy_x_Noir1.gen.Specht_Chase_2001
Soybean Response to Water: A QTL Analysis of Drought Tolerance
Minsoy_x_Noir1.gen.Terry_Chase_2000
Soybean Quantitative Trait Loci for Resistance to Insects
Minsoy_x_Noir1.gen.Tischner_Allphin_2003
Genetics of Seed Abortion and Reproductive Traits in Soybean
Misuzudaizu_x_MoshidouGong503.gen.Tajuddin_Watanabe_2003
Analysis of Quantitative Trait Loci for Protein and Lipid Contents in Soybean Seeds Using Recombinant Inbred Lines
Misuzudaizu_x_MoshidouGong503.gen.Yamanaka_2001
An Informative Linkage Map of Soybean Reveals QTLs for Flowering Time, Leaflet Morphology and Regions of Segregation Distortion
Misuzudaizu_x_MoshidouGong503.gen.Yamanaka_Nagamura_2000
Quantitative Trait Locus Analysis of Flowering Time in Soybean Using a RFLP Linkage Map.
Misuzudaizu_x_MoshidouGong503MG503.gen.Githiri_Watanabe_2006
QTL analysis of flooding tolerance in soybean at an early vegetative growth stage
Msoy8001_x_Conquista.gen.Silva_Schuster_2007
Validation of microsatellite markers for assisted selection of soybean resistance to cyst nematode races 3 and 14
N87-984-16_x_TN93-99.gen.Panthee_Kwanyuen_2004
Quantitative trait loci for β-conglycinin (7S) and glycinin (11S) fractions of soybean storage protein
N87-984-16_x_TN93-99.gen.Panthee_Pantalone_2004
Genomic regions governing soybean seed nitrogen accumulation
N87-984-16_x_TN93-99.gen.Panthee_Pantalone_2005
Quantitative Trait Loci for Seed Protein and Oil Concentration, and Seed Size in Soybean
N87-984-16_x_TN93-99.gen.Panthee_Pantalone_2006a
Quantitative trait loci controlling sulfur containing amino acids, methionine and cysteine, in soybean seeds
N87-984-16_x_TN93-99.gen.Panthee_Pantalone_2006b
Genomic Regions Associated with Amino Acid Composition in Soybean
N87-984-16_x_TN93-99.gen.Panthee_Pantalone_2006c
Modifier QTL for fatty acid composition in soybean oil
N87-984-16_x_TN93-99.gen.Panthee_Pantalone_2007
Quantitative trait loci for agronomic traits in soybean
N97-3363-3_x_PI423893.gen.Bachlava_Dewey_2009
Mapping and Comparison of Quantitative Trait Loci for Oleic Acid Seed Content in Two Segregating Soybean Populations
N97-3708-13_x_Anand.gen.Spencer_Landau-Ellis_2004
Molecular markers associated with linolenic acid content in soybean
Nannong94-156_x_Bogao.gen.Zhang_Cheng_2009
Detection of quantitative trait loci for phosphorus deficiency tolerance at soybean seedling stage
Nannong94-156_x_Bogao.gen.Zhang_Cheng_2010
Identification of genomic regions determining flower and pod numbers development in soybean (Glycine max L.)
Nannong94-156_x_Bogao.gen.Zhang_Li_2016
High-Density Genetic Mapping Identifies New Major Loci for Tolerance to Low-Phosphorus Stress in Soybean
Nasushirome_x_Enrei.gen.Oyoo_Benitez_2010
QTL Analysis of Seed Coat Cracking in Soybean
No9-I_x_Harosoy-e3.gen.Liu_Abe_2010
QTL Mapping for Photoperiod Insensitivity of a Japanese Soybean Landrace Sakamotowase
Noir1_x_Archer.gen.Reyna_Sneller_2001
Evaluation of Marker‐Assisted Introgression of Yield QTL Alleles into Adapted Soybean
Noir1_x_Minsoy.gen.Mansur_Orf_1996
Genetic Mapping of Agronomic Traits Using Recombinant Inbred Lines of Soybean
Noir1_x_Minsoy.gen.Salas_Oyarzo-Llaipen_2006
Genetic mapping of seed shape in three populations of recombinant inbred lines of soybean (Glycine max L. Merr.)
OACBayfield_x_Hefeng25.gen.Li_Liu_2010
Identification of QTL underlying vitamin E contents in soybean seed among multiple environments
OACBayfield_x_OACShire.gen.Shaw_Rajcan_2017
Molecular mapping of soybean seed tocopherols in the cross AC Bayfield X OAC Shire
OACMillennium_x_Heinong38.gen.Palomeque_Li-Jun_2009a
QTL in mega-environments: I. Universal and specific seed yield QTL detected in a population derived from a cross of high-yielding adapted × high-yielding exotic soybean lines
OACMillennium_x_Heinong38.gen.Palomeque_Li-Jun_2009b
QTL in mega-environments: II. Agronomic trait QTL co-localized with seed yield QTL detected in a population derived from a cross of high-yielding adapted × high-yielding exotic soybean lines
OACWallace_x_OACGlencoe.gen.Eskandari_Cober_2013a
Genetic control of soybean seed oil: I. QTL and genes associated with seed oil concentration in RIL populations derived from crossing moderately high-oil parents
OACWallace_x_OACGlencoe.gen.Eskandari_Cober_2013b
Genetic control of soybean seed oil: II. QTL and genes that increase oil concentration without decreasing protein or with increased seed yield
OX20-8_x_PI398841.gen.Lee_Mian_2013
Novel quantitative trait loci for partial resistance to Phytophthora sojae in soybean PI 398841
Ohsuzu_x_PI595926.gen.Kato_Sayama_2014
A major and stable QTL associated with seed weight in soybean across multiple environments and genetic backgrounds
Osage_x_RA-452.gen.Zeng_Lara_2017
Quantitative Trait Loci for Chloride Tolerance in ‘Osage’ Soybean
P9254_x_A97-770012.gen.Charlson_Bailey_2005
Molecular Marker Satt481 is Associated with Iron‐Deficiency Chlorosis Resistance in a Soybean Breeding Population
PI200538_x_CNS.gen.Tamulonis_Luzzi_1997
DNA marker analysis of loci conferring resistance to peanut root-knot nematode in soybean
PI27890_x_PI290136.gen.Lark_Chase_1995
Interactions between quantitative trait loci in soybean in which trait variation at one locus is conditional upon a specific allele at another.
PI27890_x_PI290136.gen.Lark_Orf_1994
Epistatic expression of quantitative trait loci (QTL) in soybean [Glycine max (L.) Merr.] determined by QTL association with RFLP alleles
PI27890_x_PI290136.gen.Mansur_Lark_1993
Interval mapping of quantitative trait loci for reproductive, morphological, and seed traits of soybean (Glycine max L.).
PI27890_x_PI290136.gen.Mansur_Orf_1993
Determining the linkage of quantitative trait loci to RFLP markers using extreme phenotypes of recombinant inbreds of soybean (Glycine max L. Merr.)
PI417479_x_Williams82.gen.Berger_Minor_1999
An RFLP Marker Associated with Resistance to Phomopsis Seed Decay in Soybean PI 417479
PI437654_x_BSR101.gen.Webb_Baltazar_1995
Genetic mapping of soybean cyst nematode race-3 resistance loci in the soybean PI 437.654
PI437654_x_Bell.gen.Brucker_Carlson_2005
Rhg1 alleles from soybean PI 437654 and PI 88788 respond differentially to isolates of Heterodera glycines in the greenhouse
PI437654_x_Essex.gen.Wu_Blake_2009
QTL, additive and epistatic effects for SCN resistance in PI 437654
PI438489B_x_Hamilton.gen.Masum-Akond_Ragin_2012
Quantitative Trait Loci Associated with Moisture, Protein, and Oil Content in Soybean [Glycine max (L.) Merr.]
PI438489B_x_Hamilton.gen.My-Abdelmajid_Ramos_2017a
Quantitative Trait Loci (QTL) that Underlie SCN Resistance in Soybean [Glycine max (L.) Merr.] PI438489B by 'Hamilton' Recombinant Inbred Line (RIL) Population
PI438489B_x_Hamilton.gen.My-Abdelmajid_Ramos_2017b
The 'PI 438489B' by 'Hamilton' SNP-based genetic linkage map of soybean [Glycine max (L.) Merr.] identified quantitative trait loci that underlie seedling SDS resistance
PI438489B_x_Hamilton.gen.Yue_Arelli_2001
Molecular characterization of resistance to Heterodera glycines in soybean PI 438489B
PI442031_x_Sterling.gen.Zhao_Ablett_2005
Inheritance and Genetic Mapping of Resistance to Rhizoctonia Root and Hypocotyl Rot in Soybean
PI468916_x_A81-356022.gen.Kabelka_Carlson_2005
Localization of Two Loci that Confer Resistance to Soybean Cyst Nematode from Glycine soja PI 468916
PI468916_x_A81-356022.gen.Nichols_Glover_2006
Fine Mapping of a Seed Protein QTL on Soybean Linkage Group I and Its Correlated Effects on Agronomic Traits
PI468916_x_A81356022.gen.Wang_Diers_2001
Loci underlying resistance to Race 3 of soybean cyst nematode in Glycine soja plant introduction 468916
PI483463_x_Hutcheson.gen.Asekova_Kulkarni_2016
Novel Quantitative Trait Loci for Forage Quality Traits in a Cross between PI 483463 and ‘Hutcheson’ in Soybean
PI483463_x_Hutcheson.gen.Ha_Kim_2014
Identification of quantitative trait loci controlling linolenic acid concentration in PI483463 (Glycine soja)
PI483463_x_Hutcheson.gen.Ha_Vuong_2013
Genetic mapping of quantitative trait loci conditioning salt tolerance in wild soybean (Glycine soja) PI 483463
PI507531_x_Spencer.gen.Brzostowski_Pruski_2017
Impact of seed protein alleles from three soybean sources on seed composition and agronomic traits
PI567296B_x_Century84.gen.Patzoldt_Carlson_2005
Characterization of Resistance to Brown Stem Rot of Soybean in Five Accessions from Central China
PI567541B_x_Skylla.gen.Zhang_Gu_2009
Molecular mapping of soybean aphid resistance genes in PI 567541B
PI595645_x_PI416937.gen.Harris_Abdel-Haleem_2015
Soybean Quantitative Trait Loci Conditioning Soybean Rust-Induced Canopy Damage
PI68658_x_Lawrence.gen.Fox_Cary_2015
Confirmation of a Seed Yield QTL in Soybean
PI88287_x_PI89008.gen.Vaghchhipawala_Bassüner_2001
Modulations in Gene Expression and Mapping of Genes Associated with Cyst Nematode Infection of Soybean
PI89772_x_Hamilton.gen.Yue_Sleper_2001
Mapping Resistance to Multiple Races ofHeterodera glycinesin Soybean PI 89772
PI96354_x_Bossier.gen.Li_Jakkula_2001
SSR mapping and confirmation of the QTL from PI96354 conditioning soybean resistance to southern root-knot nematode
PI97100_x_Coker237.gen.Lee_Bailey_1996
Identification of quantitative trait loci for plant height, lodging, and maturity in a soybean population segregating for growth habit
PI97100_x_Coker237.gen.Mian_Bailey_1996
Molecular markers associated with seed weight in two soybean populations
PI97100_x_Coker237.gen.Mian_Shipe_1997
RFLP Analysis of Chlorimuron Ethyl Sensitivity in Soybean
Parker_x_Gsoja.gen.Sebolt_Shoemaker_2000
Analysis of a Quantitative Trait Locus Allele from Wild Soybean That Increases Seed Protein Concentration in Soybean
Peking_x_Essex.gen.Mahalmgam_Skorupska_1995
DNA Markers for Resistance to Heterodera glycines I. Race 3 in Soybean Cultivar Peking.
Peking_x_Essex.gen.Qiu_Arelli_1999
RFLP markers associated with soybean cyst nematode resistance and seed composition in a ‘Peking’בEssex’ population
Peking_x_Keburi.gen.Song_Han_2010
Identification of QTL underlying somatic embryogenesis capacity of immature embryos in soybean (Glycine max (L.) Merr.)
Peking_x_Tamahomare.gen.Sayama_Nakazaki_2009
QTL analysis of seed-flooding tolerance in soybean (Glycine max [L.] Merr.)
Peking_x_Tamahomare.gen.Yoshikawa_Okumoto_2010
Transgressive segregation of isoflavone contents under the control of four QTLs in a cross between distantly related soybean varieties
Pioneer9071_x_8902.gen.Rossi_Orf_2013
Genetic basis of soybean adaptation to North American vs. Asian mega-environments in two independent populations from Canadian × Chinese crosses
Pioneer9071_x_Line8902.gen.Palomeque_Liu_2010
Validation of mega-environment universal and specific QTL associated with seed yield and agronomic traits in soybeans
Pureunkong_x_Jinpumkong2.gen.Lee_Park_2001
Genetic mapping of QTLs conditioning soybean sprout yield and quality
RG10_x_OX948.gen.Reinprecht_Poysa_2006
Seed and agronomic QTL in low linolenic acid, lipoxygenase-free soybean (Glycine max(L.) Merrill) germplasm
RIL6013_x_RIL3613.gen.Ning_Yuan_2018
Identification of QTLs related to the vertical distribution and seed-set of pod number in soybean [Glycine max (L.) Merri]
Ripley_x_Spencer.gen.de-Farias-Neto_Hashmi_2007
Mapping and confirmation of a new sudden death syndrome resistance QTL on linkage group D2 from the soybean genotypes PI 567374 and ‘Ripley’
S-100_x_Tokyo.gen.Lee_Boerma_2004
A major QTL conditioning salt tolerance in S-100 soybean and descendent cultivars
S08-80_x_PI464925B.gen.Winter_Shelp_2007
QTL associated with horizontal resistance to soybean cyst nematode in Glycine soja PI464925B
S100_x_Tokyo.gen.Mian_Ashley_1998
QTLs conditioning early growth in a soybean population segregating for growth habit
S19-90_x_Williams82.gen.Arahana_Graef_2001
Identification of QTLs for Resistance toSclerotinia sclerotiorumin Soybean
S19-90_x_Williams82.gen.Kim_Diers_2000
Inheritance of Partial Resistance to Sclerotinia Stem Rot in Soybean
S99-2281_x_PI408105A.gen.Nguyen_Vuong_2012
Mapping of Quantitative Trait Loci Associated with Resistance toPhytophthora sojaeand Flooding Tolerance in Soybean
SD02-4-59_x_A02-381100.gen.Wang_Jiang_2012
Quantitative trait locus analysis of saturated fatty acids in a population of recombinant inbred lines of soybean
SD02-4-59_x_A02-381100.gen.Wang_Jiang_2014
Identification and validation of quantitative trait loci for seed yield, oil and protein contents in two recombinant inbred line populations of soybean.
SD02-4-59_x_A02-381100.gen.Wang_Jiang_2015
Quantitative trait locus analysis of seed sulfur-containing amino acids in two recombinant inbred line populations of soybean
SS-516_x_Camp.gen.Zhang_Chen_2008
Quantitative Trait Loci Mapping of Seed Hardness in Soybean
SS-516_x_Camp.gen.Zhang_Chen_2009
Putative Quantitative Trait Loci Associated with Calcium Content in Soybean Seed
Skylla_x_E00290.gen.Kandel_Chen_2018
Soybean Resistance to White Mold: Evaluation of Soybean Germplasm Under Different Conditions and Validation of QTL
Sowon_x_V94-5152.gen.Jeong_Moon_2011
Fine genetic mapping of the genomic region controlling leaflet shape and number of seeds per pod in the soybean
Su88-M21S_x_XinyixiaoheidouX.gen.Wu_Zhou_2011
Identification of quantitative trait loci for partial resistance to Phytophthora sojae in soybean
TK780_x_Hidaka4.gen.Shibata_Takayama_2008
Genetic relationship between lipid content and linolenic acid concentration in soybean seeds
Taekwangkong_x_SS2-2.gen.Sun_Kim_2013a
QTLs for resistance to Phomopsis seed decay are associated with days to maturity in soybean (Glycine max)
Taekwangkong_x_SS2-2.gen.Sun_Kim_2013b
QTLs for resistance to Phomopsis seed decay are associated with days to maturity in soybean (Glycine max)
Tokei758_x_To-8E.gen.Sayama_Hwang_2010
Mapping and comparison of quantitative trait loci for soybean branching phenotype in two locations
Toyoharuka_x_Toyomusume.gen.Ohnishi_Funatsuki_2011
Variation of GmIRCHS (Glycine max inverted-repeat CHS pseudogene) is related to tolerance of low temperature-induced seed coat discoloration in yellow soybean
Toyomusume_x_Harosoy.gen.Yamada_Funatsuki_2009
A major QTL, qPDH1, is commonly involved in shattering resistance of soybean cultivars
Toyomusume_x_Hayahikan.gen.Funatsuki_Kawaguchi_2005
Mapping of QTL associated with chilling tolerance during reproductive growth in soybean
Toyomusume_x_Tsurukogane.gen.Ferdous_Watanabe_2006
QTL Analysis of Resistance to Soybean Cyst Nematode Race 3 in Soybean Cultivar Toyomusume
Uzuramame_x_L67-3469.gen.Oyoo_Githiri_2010
QTL analysis of net-like cracking in soybean seed coats
V71-370_x_PI407162.gen.Maughan_Maroof_1996
Molecular-marker analysis of seed-weight: genomic locations, gene action, and evidence for orthologous evolution among three legume species
V71-370_x_PI407162.gen.Tucker_Saghai-Maroof_2010
Mapping Quantitative Trait Loci for Partial Resistance toPhytophthora sojaein a Soybean Interspecific Cross
W05_x_C08.gen.Qi_Li_2014
Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing
Wan82-178_x_TSBPHDJ.gen.Xing_Zhou_2012
Genetic components and major QTL confer resistance to bean pyralid (Lamprosema indicata Fabricius) under multiple environments in four RIL populations of soybean
Wilis_x_Toyokomachi.gen.Uchibori_Sasaki_2009
QTL analysis for resistance to Soybean dwarf virus in Indonesian soybean cultivar Wilis
Williams82_x_PI366121.gen.Dhungana_Kulkarni_2017
Mapping quantitative trait loci controlling soybean seed starch content in an interspecific cross of ‘Williams 82’ (Glycine max ) and ‘PI 366121’ (Glycine soja )
Williams82_x_PI366121.gen.Kulkarni_Asekova_2017
Mapping QTLs for 100-seed weight in an interspecific soybean cross of Williams 82 (Glycine max) and PI 366121 (Glycine soja)
Williams82_x_PI366121.gen.Lee_Yoo_2015
Detection of novel QTLs for foxglove aphid resistance in soybean
Williams82_x_PI437655.gen.Jiao_Vuong_2015
Identification and evaluation of quantitative trait loci underlying resistance to multiple HG types of soybean cyst nematode in soybean PI 437655.
Wyandot_x_PI567301B.gen.Lee_Jun_2015
SNP markers linked to QTL conditioning plant height, lodging, and maturity in soybean
Wyandot_x_PI567324.gen.Jun_Rouf-Mian_2013
Genetic mapping of three quantitative trait loci for soybean aphid resistance in PI 567324
X3145-B-B-3-15_x_ACBrant.gen.Pandurangan_Pajak_2012
Relationship between asparagine metabolism and protein concentration in soybean seed
Xiaoheidou_x_GR8836.gen.Wang_Cheng_2015
Genetic analysis and quantitative trait locus identification of the reproductive to vegetative growth period ratio in soybean (Glycine max (L.) Merr.)
XuyongHongdouXu_x_Baohexuan3.gen.Cheng_Wang_2011
Genetic analysis and QTL detection of reproductive period and post-flowering photoperiod responses in soybean
Y23_x_Hartwig.gen.Arriagada_Mora_2012
Bayesian mapping of quantitative trait loci (QTL) controlling soybean cyst nematode resistant
Young_x_PI229358.gen.Bianchi-Hall_Carter_2000
Aluminum Tolerance Associated with Quantitative Trait Loci Derived from Soybean PI 416937 in Hydroponics
Young_x_PI416937.gen.Bailey_Mian_1997
Pod Dehiscence of Soybean: Identification of Quantitative Trait Loci
Young_x_PI416937.gen.Fasoula_Harris_2003
Identification, Mapping, and Confirmation of a Soybean Gene for Bud Blight Resistance
Young_x_PI416937.gen.Fasoula_Harris_2004
Validation and Designation of Quantitative Trait Loci for Seed Protein, Seed Oil, and Seed Weight from Two Soybean Populations
Young_x_PI416937.gen.Lee_Bailey_1996a
RFLP loci associated with soybean seed protein and oil content across populations and locations
Young_x_PI416937.gen.Lee_Bailey_1996b
Molecular Markers Associated with Soybean Plant Height, Lodging, and Maturity across Locations
Young_x_PI416937.gen.Mian_Ashley_1998a
An Additional QTL for Water Use Efficiency in Soybean
Young_x_PI416937.gen.Mian_Ashley_1998b
An Additional QTL for Water Use Efficiency in Soybean
Young_x_PI416937.gen.Mian_Bailey_1996
Molecular Markers Associated with Water Use Efficiency and Leaf Ash in Soybean
ZDD09454_x_Yudou12.gen.Lu_Wen_2013
Identification of the quantitative trait loci (QTL) underlying water soluble protein content in soybean
ZhongDou27_x_JiuNong20.gen.Wang_Han_2015
Mapping Isoflavone QTL with Main, Epistatic and QTL × Environment Effects in Recombinant Inbred Lines of Soybean
Zhongdou27_x_Jiunong20.gen.Han_Teng_2015
Unconditional and conditional QTL underlying the genetic interrelationships between soybean seed isoflavone, and protein or oil contents
Zhongdou27_x_Jiunong20.gen.Meng_Han_2011
QTL underlying the resistance to soybean aphid (Aphis glycines Matsumura) through isoflavone-mediated antibiosis in soybean cultivar ‘Zhongdou 27’
Zhongdou27_x_Jiunong20.gen.Zeng_Li_2009
Identification of QTL underlying isoflavone contents in soybean seeds among multiple environments
Zhongdou32_x_Zhongdou29.gen.Chen_Shan_2011
Quantitative trait loci analysis of stem strength and related traits in soybean
mixed.gen.Glover_Wang_2004
Near Isogenic Lines Confirm a Soybean Cyst Nematode Resistance Gene from PI 88788 on Linkage Group J
mixed.gen.Hwang_King_2016
Meta-analysis to refine map position and reduce confidence intervals for delayed-canopy-wilting QTLs in soybean
mixed.gen.Jun_Van_2008
Association analysis using SSR markers to find QTL for seed protein content in soybean
mixed.gen.Matthews_MacDonald_1998
Molecular markers residing close to the Rhg4 locus conferring resistance to soybean cyst nematode race 3 on linkage group A of soybean
mixed.gen.Meksem_Ruben_2001
Conversion of AFLP bands into high-throughput DNA markers
mixed.gen.Mudge_Cregan_1997
Two Microsatellite Markers That Flank the Major Soybean Cyst Nematode Resistance Locus
mixed.gen.Pathan_Vuong_2013
Genetic Mapping and Confirmation of Quantitative Trait Loci for Seed Protein and Oil Contents and Seed Weight in Soybean
mixed.gen.Qi_Wu_2011
Soybean oil content QTL mapping and integrating with meta-analysis method for mining genes
mixed.gen.Ramamurthy_Jedlicka_2014
Identification of new QTLs for seed mineral, cysteine, and methionine concentrations in soybean
mixed.gwas.Bandillo_Jarquin_2015
GWAS of soybean seed protein and oil, using 12,000 accessions from the USDA soybean collection and the SoySNP50K BeadChip.
mixed.gwas.Bao_Kurle_2015
GWAS of soybean sudden death syndrome (SDS), based on 282 breeding lines, genotyped with the 1536-SNP USLP1.0 chip.
mixed.gwas.Cao_Li_2017
GWAS and QTL study of soybean seed oil, conducted on 279 lines from a Chinese breeding population, genotyped with 59,845 SNPs.
mixed.gwas.Chang_Brown_2016
GWAS of Tobacco ringspot virus (TRSV) conducted on 19,652 lines in the USDA Soybean Collection, genotyped with the SoySNP50K BeadChip.
mixed.gwas.Che_Liu_2017
GWAS of Soybean mosaic virus (SMV), conducted on 165 lines from parents with differing susceptibility, genotyped with the NJAU 355K Soy SNP assay.
mixed.gwas.Dhanapal_Ray_2016
GWAS of soybean chlorophyll traits based on canopy spectral reflectance and leaf extracts.
mixed.gwas.Fang_Ma_2017
GWAS of 84 agronomic traits, conducted on 809 soybean accessions, with genotyping by resequencing.
mixed.gwas.Kim_Kim_2020
GWAS study of control of flowering time in soybean, genotyped with the 180k Axiom SoyaSNP array.
mixed.gwas.Li_Zhao_2019
GWAS study of soybean seed protein and oil, conducted on 298 accessions, genotyped with a panel of 1536 SNPs.
mixed.gwas.Mamidi_Chikara_2011
GWAS study of iron deficiency chlorosis (IDC) in soybean, conducted on two populations (n=143, n=141), genotyped with the 1536 SNP USLP1 array.
mixed.gwas.Meng_He_2016
Utilizing an innovative GWAS in CSLRP, 44 QTL 199 alleles with 72.2 % contribution to SIFC variation were detected and organized into a QTL-allele matrix for cross design and gene annotation.
mixed.gwas.Moellers_Singh_2017
GWAS study of Sclerotinia stem rot (SSR) in soybean, conducted on 466 accessions, genotyped with the SoySNP50K BeadChip.
mixed.gwas.Sonah_ODonoughue_2015
GWAS study of eight traits in soybean, conducted on 139 accessions, genotyped using GBS-derived markers.
mixed.gwas.Wang_Chu_2016
GWAS study of domestication-related traits in soybean, conducted on 105 wild and 262 cultivated soybeans, genotyped using the NJAU 355K SoySNP array.
mixed.gwas.Yan_Hofmann_2017
GWAS study of seed weight in soybean, conducted on 166 from the USDA soybean collection, genotyped using the SoySNP50K BeadChip.
mixed.gwas.Zhang_Hao_2015
GWAS study of architecture and yield-related traits in soybean, conducted on 219 accessions, genotyped using the 1536-SNP USLP1 array.
mixed.gwas.Zhang_Song_2015
GWAS study of flowering time, maturity dates and plant height in soybean, conducted on 309 soybean accessions, genotyped using the SoySNP50K BeadChip.
mixed.gwas.Zhang_Song_2016
GWAS study of seed weight in soybean, conducted on 309 soybean accessions, genotyped using the SoySNP50K BeadChip.
mixed.gwas.Zhao_Teng_2017
The aim of the present study was to investigate the genome-wide genetic architecture of resistance to SCN HG Type 2.5.7 (race 1) in landrace and elite cultivated soybeans.

Genetic Maps

mixed.map.GmComposite1999
Consensus genetic map GmComposite1999 from SoyBase.
mixed.map.GmComposite2003
Consensus genetic map GmComposite2003 from SoyBase.
mixed.map.GmFeChlorosis
Consensus genetic map GmFeChlorosis from SoyBase.
mixed.map.GmFeChlorosis2
Consensus genetic map GmFeChlorosis2 from SoyBase.
mixed.map.GmRAPD-SIU
Consensus genetic map GmRAPD-SIU from SoyBase.
mixed.map.GmRAPD-Sclero
Consensus genetic map GmRAPD-Sclero from SoyBase.
mixed.map.GmRFLP-CEW
Consensus genetic map GmRFLP-CEW from SoyBase.
mixed.map.GmRFLP-CEW2
Consensus genetic map GmRFLP-CEW2 from SoyBase.
mixed.map.GmRFLP-CEW3
Consensus genetic map GmRFLP-CEW3 from SoyBase.
mixed.map.GmRFLP-Chiba
Consensus genetic map GmRFLP-Chiba from SoyBase.
mixed.map.GmRFLP-Chiba2
Consensus genetic map GmRFLP-Chiba2 from SoyBase.
mixed.map.GmRFLP-GA1996a
Consensus genetic map GmRFLP-GA1996a from SoyBase.
mixed.map.GmRFLP-GA1996b
Consensus genetic map GmRFLP-GA1996b from SoyBase.
mixed.map.GmRFLP-GA1998
Consensus genetic map GmRFLP-GA1998 from SoyBase.
mixed.map.GmRFLP-JPT
Consensus genetic map GmRFLP-JPT from SoyBase.
mixed.map.GmRFLP-KGL
Consensus genetic map GmRFLP-KGL from SoyBase.
mixed.map.GmRFLP-USDAARS-RCS
Consensus genetic map GmRFLP-USDAARS-RCS from SoyBase.
mixed.map.GmSCN
Consensus genetic map GmSCN from SoyBase.
mixed.map.GmSSR-MO
Consensus genetic map GmSSR-MO from SoyBase.
mixed.map.GmSSR-SIU
Consensus genetic map GmSSR-SIU from SoyBase.
mixed.map.GmSSR-Sclero
Consensus genetic map GmSSR-Sclero from SoyBase.
mixed.map.GmSSR-Utah
Consensus genetic map GmSSR-Utah from SoyBase.
mixed.map.GmSSR-Utah2
Consensus genetic map GmSSR-Utah2 from SoyBase.
mixed.map.GmSSR-Utah3
Consensus genetic map GmSSR-Utah3 from SoyBase.
mixed.map.GmUSDA1997
Consensus genetic map GmUSDA1997 from SoyBase.
mixed.map.GmUtah1996
Consensus genetic map GmUtah1996 from SoyBase.

Markers

Wm82.gnm1.mrk.BARCSOYSSR
BARCSOYSSR contains 33,065 locus-specific SSR markers with di-, tri-, and tetranucleotide repeats of five or more.
Wm82.gnm1.mrk.Li_Guo_2016
59,845 single-nucleotide polymorphisms identified from re-sequencing of 279 accessions from Yangtze-Huai soybean breeding germplasm.
Wm82.gnm1.mrk.SoySNP50K
SoySNP50K is an Illumina Infinium II BeadChip that contains over 50,000 SNPs from soybean useful for genotyping a wide variety of cultivated and wild soybean accessions.
Wm82.gnm1.mrk.SoySNP6K
Illumina Infinium SoySNP6K BeadChip
Wm82.gnm1.mrk.SoySSR
This marker set contains SSRs developed and published by Cregan, et al. in 1999, with names starting with Satt or Sat_.
Wm82.gnm2.mrk.1536_USLP1
Universal Soy Linkage Panel (USLP 1.0) contains 1536 SNPs selected based on even distribution throughout each of the 20 consensus linkage groups and to have a broad range of allele frequencies in diverse germplasm.
Wm82.gnm2.mrk.BARCSOYSSR
BARCSOYSSR contains 33,065 locus-specific SSR markers with di-, tri-, and tetranucleotide repeats of five or more.
Wm82.gnm2.mrk.Fang_Ma_2017
GWAS of 84 agronomic traits, conducted on 809 soybean accessions, with genotyping by resequencing.
Wm82.gnm2.mrk.Li_Zhao_2019
12,072 SNPs from Li, Zhao, et al. (2019), a seed protein and oil study.
Wm82.gnm2.mrk.Meng_He_2016
GWAS study of seed isoflavone content (SIFC), conducted on 366 landraces, genotyped with 116,769 RAD-Seq markers.
Wm82.gnm2.mrk.NJAU355K
NJAU 355K SoySNP array used to study soybean domestication in Wang, et al. (2016).
Wm82.gnm2.mrk.Sonah_ODonoughue_2015
GWAS study of eight traits in soybean, conducted on 139 accessions, genotyped using GBS-derived markers.
Wm82.gnm2.mrk.SoySNP50K
SoySNP50K is an Illumina Infinium II BeadChip that contains over 50,000 SNPs from soybean useful for genotyping a wide variety of cultivated and wild soybean accessions.
Wm82.gnm2.mrk.SoySNP6K
Illumina Infinium SoySNP6K BeadChip
Wm82.gnm2.mrk.SoySSR
This marker set contains SSRs developed and published by Cregan, et al. in 1999, with names starting with Satt or Sat_.
Wm82.gnm2.mrk.SoyaSNP180K
Axiom SoyaSNP180K array with 180,981 SNPs developed by Lee, et al. (2015).
Wm82.gnm2.mrk.Zhao_Teng_2017
A total of 200 diverse soybean accessions were screened for resistance to SCN HG Type 2.5.7 and genotyped through sequencing using SLAF-seq. A total of 33,194 SNPs were identified with minor allele frequencies (MAF) over 4%, covering 97% of all the genotypes.

Diversity

Wm82.gnm1.div.Bandillo_Lorenz_2017
Haplotypes of SoyNAM parents and progeny with respect to Williams 82 genome assembly gnm1.
Wm82.gnm1.div.ContrerasSoto_Mora_2017
Haplotype information for 169 Brazilian soybean cultivars genotyped with the 6K SNPchip.
Wm82.gnm1.div.Hu_Zhang_2020
Variant information for 96 Glycine soja accessions, genotyped using the NJAU 335K SoySNP array, provided by Guizhen Kan.
Wm82.gnm1.div.Song_Hyten_2015
VCF, HapMap, and Flapjack files containing genotype information of the whole U.S. soybean germplasm collection using the SoySNP50K BeadChip.
Wm82.gnm1.div.Song_Wei_2015
The polymorphism information of INDELS and SNPs between Hedou12 and Wm82.
Wm82.gnm1.div.Wang_Jiao_2016
Variant information in vcf format for 367 Chinese soybean accessions using the NJAU 355K SoySNP array, provided by Dr. Jiao Wang.
Wm82.gnm1.div.Zhou_Jiang_2015
Resequencing information for 302 wild and cultivated soybean accessions.
Wm82.gnm2.div.Bandillo_Lorenz_2017
Haplotypes of SoyNAM parents and progeny with respect to Williams 82 gnm2.
Wm82.gnm2.div.Jeong_Moon_2019
Variant information for 4234 soybean accessions (Glycine max and Glycine soja) genotyped with the Axiom SoyaSNP array containing 180,961 SNPs.
Wm82.gnm2.div.Lam_Xu_2010
VCF file containing genotype information for 31 wild and cultivated soybeans received from Meng Ni, Tin Hang, and Hon-Ming Lam.
Wm82.gnm2.div.Lee_Jeong_2015
Text, VCF, HapMap, and Flapjack file containing genotype information for 222 Korean accessions.
Wm82.gnm2.div.Song_Hyten_2015
VCF, HapMap, and Flapjack files containing genotype information of the whole U.S. soybean germplasm collection using the SoySNP50K BeadChip.
Wm82.gnm2.div.Song_NAM_2021a
Imputed genotypes for 5176 Nested Association Mapping RILs relative to 40 NAM parental genotypes, genotyped using the SoySNP50K and SoyNAM6K assays. These data sets report alleles at 29,417 SNP positions.
Wm82.gnm2.div.Song_NAM_2021b
Imputed genotypes for 5176 Nested Association Mapping RILs relative to 40 NAM parental genotypes, genotyped with WGS and the SoySNP50K and SoyNAM6K assays. These data sets report alleles at 423,419 SNP positions.
Wm82.gnm2.div.Torkamaneh_Laroche_2017
Resequencing information for 102 Canadian soybean accessions.
Wm82.gnm2.div.Torkamaneh_Laroche_2019
HapMap Data, GmHapMap, for 1007 accession of Glycine max and Glycine soja, from Torkamaneh et al. (2019)
Wm82.gnm2.div.Valliyodan_Brown_2021
Variant information for 481 soybean accessions (Glycine max and Glycine soja), provided by Babu Valliyodan and Henry Nguyen, as part of the United Soybean Board project to genotype and characterize diverse accessions.
Wm82.gnm2.div.Wei_Mesquita_2017
VCF file containing GBS information for 374 U.S. and Brazilian accessions against 68301 SNPs.
Wm82.gnm2.div.Wickland_Battu_2017
VCF files containing genotype information for 3 populations of soybean produced by GB-eaSy.
Wm82.gnm2.div.Zhang_Jiang_2020
Variant information for 1,556 resequenced soybean accessions Glycine max and Glycine soja, provided by Yong-Qiang (Charles) An and Rick Meyers, relative to Wm82 assembly 2.
Wm82.gnm2.div.dosSantos_Valliyodan_2016
VCF and HapMap file containing genotype information for 28 Brazilian soybean accessions.

Glycine soja

Genomes

F_IGA1003.gnm1.V9RB
Genome assembly files for Glycine soja F (F_IGA1003 in publication; WHFS_GsojaF_1.0 in the GenBank assembly record), Chu et al. (2021)
PI483463.gnm1.YJWS
Glycine soja accession PI 483463 genome assembly, v1.0
W05.gnm1.SVL1
Genome assembly files for cultivar W05 from Xie, Lam et al. (2019): A reference-grade wild soybean genome

Annotations

F_IGA1003.gnm1.ann1.G61B
Genome annotation files for cultivar F, Chu et al. (2021)
PI483463.gnm1.ann1.3Q3Q
Glycine soja accession PI483463 genome annotation files; JGI annotation version 1 on assembly 1
W05.gnm1.ann1.T47J
Glycine soja accession W05 genome annotation files

GWAS and QTL Studies

mixed.gwas.Hu_Zhang_2014
GWAS of soybean yield-related traits, conducted on 113 wild soybean accessions, genotyped with 85 simple sequence repeat (SSR) markers.

Glycine cyrtoloba

Genomes

G1267.gnm1.YWW6
Genome assemblies for Glycine cyrtoloba, accession G1267, from Zhuang, Wang et al. (2021)

Annotations

G1267.gnm1.ann1.HRFD
Genome annotation files for Glycine cyrtoloba, accession G1267, from Zhuang, Wang et al. (2021)

Glycine dolichocarpa

Genomes

G1134.gnm1.PP7B
Genome assemblies for Glycine dolichocarpa, accession G1134, from Zhuang, Wang et al. (2021)

Annotations

G1134.gnm1.ann1.4BJM
Genome annotation files for Glycine tolichocarpa, accession G1134, from Zhuang, Wang et al. (2021)

Glycine falcata

Genomes

G1718.gnm1.B1PY
Genome assemblies for Glycine falcata, accession G1718, from Zhuang, Wang et al. (2021)

Annotations

G1718.gnm1.ann1.2KSV
Genome annotation files for Glycine falcata, accession G1718, from Zhuang, Wang et al. (2021)

Glycine stenophita

Genomes

G1974.gnm1.7MZB
Genome assemblies for Glycine stenophita, accession G1974, from Zhuang, Wang et al. (2021)

Annotations

G1974.gnm1.ann1.F257
Genome annotation files for Glycine stenphyta, accession G1974, from Zhuang, Wang et al. (2021)

Glycine syndetika

Genomes

G1300.gnm1.C11H
Genome assemblies for Glycine syndetika, accession G1300, from Zhuang, Wang et al. (2021)

Annotations

G1300.gnm1.ann1.RRK6
Genome annotation files for Glycine syndetika, accession G1300, from Zhuang, Wang et al. (2021)

Glycine D3-tomentella

Genomes

G1403.gnm1.CL6K
Genome assemblies for Glycine D3 tomentella, accession G1403, from Zhuang, Wang et al. (2021)

Annotations

G1403.gnm1.ann1.XNZQ
Genome annotation files for Glycine D3 tomentella, accession G1403, from Zhuang, Wang et al. (2021)