Data Collections

Arachis data collections

Arachis hypogaea

Genomes

Fuhuasheng.gnm1.XX5Y
Genome assembly for tetraploid peanut cultivar Fuhuasheng, from Chen et al., 2019
Shitouqi.gnm1.L4VP
Genome assembly for peanut cultivar Shitouqui, from Zhuang et al., 2019.
Tifrunner.gnm1.KYV3
Genome assembly 1 for Arachis hypogaea, cultivar Tifrunner
Tifrunner.gnm2.J5K5
Genome assembly 2 for Arachis hypogaea, cultivar Tifrunner. This version has structural changes relative to assembly 1.

Annotations

Tifrunner.gnm1.ann1.CCJH
Arachis hypogaea accession Tifrunner annotation files from genome assembly 1.0
Tifrunner.gnm2.ann1.4K0L
Gene models for genome assembly 2 for Arachis hypogaea, cultivar Tifrunner.

GWAS and QTL Studies

Huayu28_x_P76.gen.Hu_Zhang_2018
A genetic map from a Huayu28 x P76 RIL population composed of 2,334 markers (2,266 SNPs and 68 microsatellites) for the study of seed oleic and linoleic acid content
ICGS44_x_ICGS76.gen.Gautami_Pandey_2012
SSR genetic map generated from a RIL mapping population derived from the cross of ICGS 44 and ICGS 76
ICGS76_x_CSMG84.gen.Gautami_Pandey_2012
SSR genetic map generated from a RIL population derived from the cross of ICGS 76 with CSMG 84-1
NAMFlor7.gwas.Gangurde_Wang_2020
Gangurde, Wang, et al. (2020) GWAS study of pod and seed weight on the NAM Florida-7 mapping population
NAMTifr.gwas.Gangurde_Wang_2020
Gangurde, Wang, et al. (2020) NAM Tifrunner GWAS study of pod and seed weight
SunOleic97R_x_NC94022.gen.Qin_Feng_2012
SSR-based genetic map constructed using a F5:6 RIL population derived from the cross of SunOleic 97R with NC94022 along with a Tomato spotted wilt virus QTL
TAG24_x_GPBD4.gen.Kolekar_Sujay_2016
An F6 population of 266 RILs was advanced by single seed descent from a cross of TAG 24 and GPBD 4. QTLs were found for Late leaf spot and Puccinia rust.
TAG24_x_ICGV86031.gen.Ravi_Vadez_2011
SSR genetic map from a cross of 'TAG 24' and 'ICGV 86031'
TG26_x_GPBD4.gen.Sarvamanga_Gowdaa_2011
TT_TG26_x_GPBD4_b, an SSR map created from a cross of the A. hypogaea cultivars 'TG 26' and 'GPBD 4'.
TG26_x_GPBD4.gen.Sujay_Gowda_2012
Genetic map derived from a cross of A. hypogaea cultivers 'TG 26' and 'GPBD 4'.
Tifrunner_x_GT-C20.gen.Agarwal_Clevenger_2018
Genetic map of Tifrunner x GT-C20 for the study of early and late leaf spots (ELS and LLS) and tomato spotted wilt virus (TSWV).
Tifrunner_x_GT-C20.gen.Qin_Feng_2012
SSR-based genetic map constructed using a F5:6 RIL population derived from Tifrunner x GT-C20
Tifrunner_x_GT-C20.gen.Wang_Penmetsa_2012
TT_Tifrunner_x_GT-C20_b, an SSR-based map derived from a cross of the A. hypogaea cultivars Tifrunner and GT-C20.
USPeanutCore.gwas.Otyama_Kulkarni_2020
GWAS determining markers associated with fatty acid composition in the USDA peanut core collection.
VG9514_x_TAG24.gen.Mondal_Hadapad_2014
Genetic map derived from a cross of A. hypogaea cultivars VG 9514 and TAG 24.
mixed.gen.Gautami_Pandey_2012
Consensus genetic map for Arachis hypogaea from three RIL populations: ICGS76 x CSMG84-1, ICGS44 x ICGS76, and TAG24 x ICGV86031
mixed.gen.Sujay_Gowda_2012
A consensus genetic map for Arachis hypogaea built from TAG24 x GPBD4 and TG26 x GPBD4 RIL populations

Markers

Tifrunner.gnm1.mrk.Agarwal_Clevenger_2018
Genetic map of Tifrunner x GT-C20 for the study of early and late leaf spots (ELS and LLS) and tomato spotted wilt virus (TSWV).
Tifrunner.gnm1.mrk.Axiom_Arachis2
Axiom_Arachis2 is a SNP marker set developed by Clevenger, et al. DOI:10.1016/j.molp.2016.11.015
Tifrunner.gnm1.mrk.Axiom_Arachis_58K
Axiom_Arachis_58K is a high-density SNP array with 58,233 SNPs reduced from 163,782 SNPs derived from DNA resequencing and RNA-sequencing of 41 groundnut accessions and wild diploid ancestors.

Diversity

aradu1_araip1.gnm1.div.Clevenger_Korani_2018
Genotyping of African germplasm collection
aradu1_araip1.gnm1.div.Otyama_Kulkarni_2020
Diversity data for the U.S. peanut core collection, genotyped relative to the diploid A. duranensis and A. ipaensis genome assemblies.
aradu1_araip1.gnm1.div.Otyama_Wilkey_2019
Genotype data for US Peanut Mini Core collection.

Arachis duranensis

Genomes

V14167.gnm1.SWBf
Genome assembly 1 for Arachis duranensis, accession V14167
V14167.gnm2.J7QH
Genome assembly 2 for Arachis duranensis, accession V14167

Annotations

V14167.gnm1.ann1.cxSM
genome annotations

GWAS and QTL Studies

PI475887_x_Grif15036.gen.Nagy_Guo_2012
AA_A.duranensis_x_A.duranensis_a, SNP and SSR-based genetic map of Arachis duranensis from a cross of 'PI 475887' and 'Grif 15036'.

Arachis ipaensis

Genomes

K30076.gnm1.bXJ8
Genome assembly 1 for Arachis ipaensis, accession K30076.
K30076.gnm2.1GWY
Genome Assembly 2 for A. ipaensis K30076. A high-quality chromosome-scale assembly, based on PacBio RSII and Sequel reads, ordered into pseudomolecules by Dovetail using Hi-C Chicago libraries and the HiRise and SNAP.

Annotations

K30076.gnm1.ann1.J37m
genome annotations for Arachis ipaensis K30076.gnm1.ann1

Arachis cardenasii

Genomes

K10017.gnm1.DQ4M
Genome assembly 1 for Arachis cardenasii, accession K10017