Arachis data collections

Arachis hypogaea

Genomes

BaileyII.gnm1.1JTF: Arachis hypogaea accession Bailey II, genome assembly 1
Fuhuasheng.gnm1.XX5Y: Genome assembly for tetraploid peanut cultivar Fuhuasheng, from Chen et al., 2019
Shitouqi.gnm1.L4VP: Genome assembly for peanut cultivar Shitouqui, from Zhuang et al., 2019.
Tifrunner.gnm1.KYV3: Genome assembly 1 for Arachis hypogaea, cultivar Tifrunner
Tifrunner.gnm2.J5K5: Genome assembly 2 for Arachis hypogaea, cultivar Tifrunner. This version has structural changes relative to assembly 1.

Annotations

BaileyII.gnm1.ann1.PQM7: Annotation 1 for Arachis hypogaea accession Bailey II, genome assembly 1
Tifrunner.gnm1.ann1.CCJH: Arachis hypogaea accession Tifrunner annotation files from genome assembly 1.0
Tifrunner.gnm2.ann1.4K0L: Gene models for genome assembly 2 for Arachis hypogaea, cultivar Tifrunner.
Tifrunner.gnm2.ann2.PVFB: Annotation 2, using the BIND pipeline, for Arachis hypogaea, cultivar Tifrunner

GWAS

NAMFlor7.gwas.Gangurde_Wang_2020: Gangurde, Wang, et al. (2020) GWAS study of pod and seed weight on the NAM Florida-7 mapping population
NAMTifr.gwas.Gangurde_Wang_2020: Gangurde, Wang, et al. (2020) NAM Tifrunner GWAS study of pod and seed weight
USPeanutCore.gwas.Otyama_Kulkarni_2020: GWAS determining markers associated with fatty acid composition in the USDA peanut core collection.
mixed.gwas.Li_Cui_2022: Arachis hypogaea genetic loci associated with growth habit-related traits mapped onto the A. duranensis V14167 and A. ipaensis K30076 v1.0 assemblies.

QTL Studies

Huayu28_x_P76.qtl.Hu_Zhang_2018: A genetic map from a Huayu28 x P76 RIL population composed of 2,334 markers (2,266 SNPs and 68 microsatellites) for the study of seed oleic and linoleic acid content
SunOleic97R_x_NC94022.qtl.Qin_Feng_2012: SSR-based genetic map constructed using a F5:6 RIL population derived from the cross of SunOleic 97R with NC94022 along with a Tomato spotted wilt virus QTL
TAG24_x_GPBD4.qtl.Kolekar_Sujay_2016: An F6 population of 266 RILs was advanced by single seed descent from a cross of TAG 24 and GPBD 4. QTLs were found for Late leaf spot and Puccinia rust.
TG26_x_GPBD4.qtl.Sarvamanga_Gowdaa_2011: TT_TG26_x_GPBD4_b, an SSR map created from a cross of the A. hypogaea cultivars 'TG 26' and 'GPBD 4'.
Tifrunner_x_GT-C20.qtl.Agarwal_Clevenger_2018: Genetic map of Tifrunner x GT-C20 for the study of early and late leaf spots (ELS and LLS) and tomato spotted wilt virus (TSWV).
Tifrunner_x_GT-C20.qtl.Qin_Feng_2012: SSR-based genetic map constructed using a F5:6 RIL population derived from Tifrunner x GT-C20
Tifrunner_x_GT-C20.qtl.Wang_Penmetsa_2012: TT_Tifrunner_x_GT-C20_b, an SSR-based map derived from a cross of the A. hypogaea cultivars Tifrunner and GT-C20.
VG9514_x_TAG24.qtl.Mondal_Hadapad_2014: Genetic map derived from a cross of A. hypogaea cultivars VG 9514 and TAG 24.

Genetic Maps

Huayu28_x_P76.map.Hu_Zhang_2018: A genetic map from a Huayu28 x P76 RIL population composed of 2,334 markers (2,266 SNPs and 68 microsatellites) for the study of seed oleic and linoleic acid content.
ICGS44_x_ICGS76.map.Gautami_Pandey_2012: SSR genetic map generated from a RIL mapping population derived from the cross of ICGS 44 and ICGS 76
ICGS76_x_CSMG84.map.Gautami_Pandey_2012: SSR genetic map generated from a RIL population derived from the cross of ICGS 76 with CSMG 84-1
SunOleic97R_x_NC94022.map.Qin_Feng_2012: SSR-based genetic map constructed using a F5:6 RIL population derived from the cross of SunOleic 97R with NC94022 along with a Tomato spotted wilt virus QTL
TAG24_x_GPBD4.map.Kolekar_Sujay_2016: An F6 population of 266 RILs was advanced by single seed descent from a cross of TAG 24 and GPBD 4. QTLs were found for Late leaf spot and Puccinia rust.
TAG24_x_ICGV86031.map.Ravi_Vadez_2011: SSR genetic map from a cross of 'TAG 24' and 'ICGV 86031'
TG26_x_GPBD4.map.Sarvamanga_Gowdaa_2011: TT_TG26_x_GPBD4_b, an SSR map created from a cross of the A. hypogaea cultivars 'TG 26' and 'GPBD 4'.
TG26_x_GPBD4.map.Sujay_Gowda_2012: Genetic map derived from a cross of A. hypogaea cultivers 'TG 26' and 'GPBD 4'.
Tifrunner_x_GT-C20.map.Agarwal_Clevenger_2018: Genetic map of Tifrunner x GT-C20 for the study of early and late leaf spots (ELS and LLS) and tomato spotted wilt virus (TSWV).
Tifrunner_x_GT-C20.map.Qin_Feng_2012: SSR-based genetic map constructed using a F5:6 RIL population derived from Tifrunner x GT-C20
Tifrunner_x_GT-C20.map.Wang_Penmetsa_2012: TT_Tifrunner_x_GT-C20_b, an SSR-based map derived from a cross of the A. hypogaea cultivars Tifrunner and GT-C20.
VG9514_x_TAG24.map.Mondal_Hadapad_2014: Genetic map derived from a cross of A. hypogaea cultivars VG 9514 and TAG 24.
mixed.map.Gautami_Pandey_2012: Consensus genetic map for Arachis hypogaea from three RIL populations: ICGS76 x CSMG84-1, ICGS44 x ICGS76, and TAG24 x ICGV86031
mixed.map.Sujay_Gowda_2012: A consensus genetic map for Arachis hypogaea built from TAG24 x GPBD4 and TG26 x GPBD4 RIL populations

Markers

Tifrunner.gnm1.mrk.Agarwal_Clevenger_2018: Genetic map of Tifrunner x GT-C20 for the study of early and late leaf spots (ELS and LLS) and tomato spotted wilt virus (TSWV).
Tifrunner.gnm1.mrk.Axiom_Arachis2: Axiom_Arachis2 is a SNP marker set developed by Clevenger, et al. DOI:10.1016/j.molp.2016.11.015
Tifrunner.gnm1.mrk.Axiom_Arachis_58K: Axiom_Arachis_58K is a high-density SNP array with 58,233 SNPs reduced from 163,782 SNPs derived from DNA resequencing and RNA-sequencing of 41 groundnut accessions and wild diploid ancestors.

Diversity

aradu1_araip1.gnm1.div.Clevenger_Korani_2018: Genotyping of African germplasm collection
aradu1_araip1.gnm1.div.Otyama_Kulkarni_2020: Diversity data for the U.S. peanut core collection, genotyped relative to the diploid A. duranensis and A. ipaensis genome assemblies.
aradu1_araip1.gnm1.div.Otyama_Wilkey_2019: Genotype data for US Peanut Mini Core collection.

Arachis duranensis

Genomes

V14167.gnm1.SWBf: Genome assembly 1 for Arachis duranensis, accession V14167
V14167.gnm2.J7QH: Genome assembly 2 for Arachis duranensis, accession V14167

Annotations

V14167.gnm1.ann1.cxSM: genome annotations

Genetic Maps

PI475887_x_Grif15036.map.Nagy_Guo_2012: AA_A.duranensis_x_A.duranensis_a, SNP and SSR-based genetic map of Arachis duranensis from a cross of 'PI 475887' and 'Grif 15036'.

Markers

V14167.gnm1.mrk.Li_Cui_2022: Markers from the Affymetrix version 2.0 SNP array mapped to the Arachis duranensis V14167 v1.0 assembly.

Arachis ipaensis

Genomes

K30076.gnm1.bXJ8: Genome assembly 1 for Arachis ipaensis, accession K30076.
K30076.gnm2.1GWY: Genome Assembly 2 for A. ipaensis K30076. A high-quality chromosome-scale assembly, based on PacBio RSII and Sequel reads, ordered into pseudomolecules by Dovetail using Hi-C Chicago libraries and the HiRise and SNAP.

Annotations

K30076.gnm1.ann1.J37m: genome annotations for Arachis ipaensis K30076.gnm1.ann1

Markers

K30076.gnm1.mrk.Li_Cui_2022: Markers from the Affymetrix version 2.0 SNP array mapped to the Arachis ipaensis K30076 v1.0 assembly.

Arachis cardenasii

Genomes

K10017.gnm1.DQ4M: Genome assembly 1 for Arachis cardenasii, accession K10017

Arachis stenosperma

Genomes

V10309.gnm1.PFL2: Genome assembly 1 for Arachis stenosperma, accession V10309

Data Collections

Arachis data collections