Tools

Informatic Tools

Browse and Search

LIS Datastore
Browser interface to all of the files in the Legume Information System.
LIS InterMines
LIS InterMines: one mine per genus including genetic data, and an overall LegumeMine with genome annotations. Tools include a powerful query engine.
DSCensor Data Overviews
Overviews of data characteristics at LIS: genome assembly sizes, gene counts, BUSCO coverage, etc.
Genome Context Viewer
Browser for dynamically discovering and viewing genomic synteny across selected species.
ZZBrowse GWAS/QTL
Interactive visualization of multiple GWAS and QTL data sets, using synteny to identify potentially conserved association regions between species.
CMap
View genetic and comparative maps.
LIS Germplasm GIS Viewer
View GIS location information for legume accessions.
Conekt Comparative Expression
Conekt is a tool for comparative gene expression analysis.
Gene Family Search
Functional keyword search for gene families

Sequence search

LIS SequenceServer BLAST
Run BLASTs against LIS genomes, CDSes, and proteins
Funnotate: Annotate Your Sequences
Functional annotation of protein or nucleotide sequences, and placement into gene trees