Tools

Informatic Tools

Download / Query

LIS Datastore
Browser interface to all of the files in the Legume Information System.
LIS InterMines
LIS InterMines: one mine per genus including genetic data, and an overall LegumeMine with genome annotations. Tools include a powerful query engine.
DSCensor Data Overviews
Overviews of data characteristics at LIS: genome assembly sizes, gene counts, BUSCO coverage, etc.

Sequence search

LIS SequenceServer BLAST
Run BLASTs against LIS genomes, CDSes, and proteins
Funnotate: Annotate Your Sequences
Functional annotation of protein or nucleotide sequences, and placement into gene trees

Visualize / Browse

Genome Context Viewer
Browser for dynamically discovering and viewing genomic synteny across selected species.
ZZBrowse GWAS/QTL
Interactive visualization of multiple GWAS and QTL data sets, using synteny to identify potentially conserved association regions between species.
CMap: Genetic Map Viewer
View genetic and comparative maps.
LIS Germplasm GIS Viewer
View GIS location information for legume accessions.
Conekt Comparative Expression
Conekt is a tool for comparative gene expression analysis.
Gene Family Search
Functional keyword search for gene families
GCViT: SNP Comparison Tool
A multiple chromosome visualisation tool for visualizing resequencing or SNP array data